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ACD79_192

Alias: ACD79_17255.11960.21

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD79_192_1

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comp(3..623)
DNA (621bp) protein (207aa)
type IV pilus secretin PilQ
seg (db=Seg db_id=seg from=4 to=22)
Secretin_N (db=HMMPfam db_id=PF03958 from=120 to=181 evalue=4.5e-11 interpro_id=IPR005644 interpro_description=NolW-like)
STN (db=HMMPfam db_id=PF07660 from=63 to=107 evalue=1.1e-10 interpro_id=IPR011662 interpro_description=Secretin/TonB, short N-terminal GO=Cellular Component: outer membrane (GO:0019867))
ACD79_192_2

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comp(680..1240)
DNA (561bp) protein (187aa)
seg (db=Seg db_id=seg from=6 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=6 to=28)
seg (db=Seg db_id=seg from=49 to=59)
seg (db=Seg db_id=seg from=166 to=179)
ACD79_192_3

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comp(1237..1899)
DNA (663bp) protein (221aa)
seg (db=Seg db_id=seg from=139 to=151)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
seg (db=Seg db_id=seg from=39 to=54)
PilN (db=HMMPfam db_id=PF05137 from=61 to=139 evalue=1.4e-05 interpro_id=IPR007813 interpro_description=Fimbrial assembly)
ACD79_192_4

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comp(1899..2933)
DNA (1035bp) protein (345aa)
type IV pilus assembly protein PilM
seg (db=Seg db_id=seg from=265 to=275)
seg (db=Seg db_id=seg from=55 to=65)
seg (db=Seg db_id=seg from=335 to=344)
ACD79_192_5

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3411..4193
DNA (783bp) protein (261aa)
RNA polymerase sigma factor WhiG
seg (db=Seg db_id=seg from=53 to=65)
seg (db=Seg db_id=seg from=241 to=252)
SIGMA70_1 (db=PatternScan db_id=PS00715 from=52 to=65 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
ACD79_192_6

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4180..4491
DNA (312bp) protein (104aa)
seg (db=Seg db_id=seg from=72 to=86)
Uncharacterized protein {ECO:0000313|EMBL:EKD28573.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_192_7

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4491..6419
DNA (1929bp) protein (643aa)
seg (db=Seg db_id=seg from=396 to=409)
coiled-coil (db=Coil db_id=coil from=482 to=503 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD28574.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_192_8

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6426..6698
DNA (273bp) protein (91aa)
cytoplasmic domain of flagellar protein FhlB-like protein
Bac_export_2 (db=HMMPfam db_id=PF01312 from=9 to=82 evalue=4.7e-16 interpro_id=IPR006135 interpro_description=Type III secretion exporter GO=Biological Process: protein secretion (GO:0009306), Cellular Component: membrane (GO:0016020))
type III secretion exporter; K04061 flagellar biosynthesis protein alias=ACD79_17255.11960.21G0008,ACD79_17255.11960.21_8,ACD79_C00195G00008 id=126507 tax=ACD79 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
Uncharacterized protein {ECO:0000313|EMBL:EKD28575.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_192_9

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6791..8311
DNA (1521bp) protein (507aa)
anfA; nitrogen fixation protein AnfA
SIGMA54_INTERACT_1 (db=PatternScan db_id=PS00675 from=217 to=230 evalue=0.0 interpro_id=IPR002078 interpro_description=RNA polymerase sigma factor 54, interaction GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: transcription factor binding (GO:0008134))
SIGMA54_INTERACT_2 (db=PatternScan db_id=PS00676 from=279 to=294 evalue=0.0 interpro_id=IPR002078 interpro_description=RNA polymerase sigma factor 54, interaction GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: transcription factor binding (GO:0008134))
SIGMA54_INTERACT_3 (db=PatternScan db_id=PS00688 from=406 to=415 evalue=0.0 interpro_id=IPR002078 interpro_description=RNA polymerase sigma factor 54, interaction GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: transcription factor binding (GO:0008134))
ACD79_192_10

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comp(8322..9254)
DNA (933bp) protein (311aa)
pleD4; response regulator/GGDEF domain-containing protein
seg (db=Seg db_id=seg from=128 to=139)
coiled-coil (db=Coil db_id=coil from=131 to=152 evalue=NA)
Nucleotide cyclase (db=superfamily db_id=SSF55073 from=154 to=310 evalue=8.3e-45 interpro_id=IPR001054 interpro_description=Adenylyl cyclase class-3/4/guanylyl cyclase GO=Biological Process: cyclic nucleotide biosynthetic process (GO:0009190), Molecular Function: phosphorus-oxygen lyase activity (GO:0016849), Biological Process: intracellular signaling pathway (GO:0023034))
ACD79_192_11

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comp(9307..11019)
DNA (1713bp) protein (571aa)
FHA domain-containing protein
seg (db=Seg db_id=seg from=176 to=193)
seg (db=Seg db_id=seg from=266 to=283)
seg (db=Seg db_id=seg from=315 to=332)
ACD79_192_12

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comp(11085..12005)
DNA (921bp) protein (307aa)
11085..12005 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD28579.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 12 items

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