Alias: ACD79_17255.11960.21
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD79_192_1
uncultured bacterium, Bacteria
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Not on your lists |
comp(3..623)
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type IV pilus secretin PilQ
seg (db=Seg db_id=seg from=4 to=22)
Secretin_N (db=HMMPfam db_id=PF03958 from=120 to=181 evalue=4.5e-11 interpro_id=IPR005644 interpro_description=NolW-like)
STN (db=HMMPfam db_id=PF07660 from=63 to=107 evalue=1.1e-10 interpro_id=IPR011662 interpro_description=Secretin/TonB, short N-terminal GO=Cellular Component: outer membrane (GO:0019867))
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ACD79_192_2
uncultured bacterium, Bacteria
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Not on your lists |
comp(680..1240)
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seg (db=Seg db_id=seg from=6 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=6 to=28)
seg (db=Seg db_id=seg from=49 to=59)
seg (db=Seg db_id=seg from=166 to=179)
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ACD79_192_3
uncultured bacterium, Bacteria
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Not on your lists |
comp(1237..1899)
|
seg (db=Seg db_id=seg from=139 to=151)
transmembrane_regions (db=TMHMM db_id=tmhmm from=32 to=54)
seg (db=Seg db_id=seg from=39 to=54)
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ACD79_192_4
uncultured bacterium, Bacteria
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Not on your lists |
comp(1899..2933)
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type IV pilus assembly protein PilM
seg (db=Seg db_id=seg from=265 to=275)
seg (db=Seg db_id=seg from=55 to=65)
seg (db=Seg db_id=seg from=335 to=344)
|
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ACD79_192_5
uncultured bacterium, Bacteria
|
Not on your lists |
3411..4193
|
RNA polymerase sigma factor WhiG
seg (db=Seg db_id=seg from=53 to=65)
seg (db=Seg db_id=seg from=241 to=252)
SIGMA70_1 (db=PatternScan db_id=PS00715 from=52 to=65 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
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ACD79_192_6
uncultured bacterium, Bacteria
|
Not on your lists |
4180..4491
|
seg (db=Seg db_id=seg from=72 to=86)
Uncharacterized protein {ECO:0000313|EMBL:EKD28573.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD79_192_7
uncultured bacterium, Bacteria
|
Not on your lists |
4491..6419
|
seg (db=Seg db_id=seg from=396 to=409)
coiled-coil (db=Coil db_id=coil from=482 to=503 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD28574.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD79_192_8
uncultured bacterium, Bacteria
|
Not on your lists |
6426..6698
|
cytoplasmic domain of flagellar protein FhlB-like protein
Bac_export_2 (db=HMMPfam db_id=PF01312 from=9 to=82 evalue=4.7e-16 interpro_id=IPR006135 interpro_description=Type III secretion exporter GO=Biological Process: protein secretion (GO:0009306), Cellular Component: membrane (GO:0016020))
type III secretion exporter; K04061 flagellar biosynthesis protein alias=ACD79_17255.11960.21G0008,ACD79_17255.11960.21_8,ACD79_C00195G00008 id=126507 tax=ACD79 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
Uncharacterized protein {ECO:0000313|EMBL:EKD28575.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD79_192_9
uncultured bacterium, Bacteria
|
Not on your lists |
6791..8311
|
anfA; nitrogen fixation protein AnfA
SIGMA54_INTERACT_1 (db=PatternScan db_id=PS00675 from=217 to=230 evalue=0.0 interpro_id=IPR002078 interpro_description=RNA polymerase sigma factor 54, interaction GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: transcription factor binding (GO:0008134))
SIGMA54_INTERACT_2 (db=PatternScan db_id=PS00676 from=279 to=294 evalue=0.0 interpro_id=IPR002078 interpro_description=RNA polymerase sigma factor 54, interaction GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: transcription factor binding (GO:0008134))
SIGMA54_INTERACT_3 (db=PatternScan db_id=PS00688 from=406 to=415 evalue=0.0 interpro_id=IPR002078 interpro_description=RNA polymerase sigma factor 54, interaction GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: transcription factor binding (GO:0008134))
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ACD79_192_10
uncultured bacterium, Bacteria
|
Not on your lists |
comp(8322..9254)
|
pleD4; response regulator/GGDEF domain-containing protein
seg (db=Seg db_id=seg from=128 to=139)
coiled-coil (db=Coil db_id=coil from=131 to=152 evalue=NA)
Nucleotide cyclase (db=superfamily db_id=SSF55073 from=154 to=310 evalue=8.3e-45 interpro_id=IPR001054 interpro_description=Adenylyl cyclase class-3/4/guanylyl cyclase GO=Biological Process: cyclic nucleotide biosynthetic process (GO:0009190), Molecular Function: phosphorus-oxygen lyase activity (GO:0016849), Biological Process: intracellular signaling pathway (GO:0023034))
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ACD79_192_11
uncultured bacterium, Bacteria
|
Not on your lists |
comp(9307..11019)
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FHA domain-containing protein
seg (db=Seg db_id=seg from=176 to=193)
seg (db=Seg db_id=seg from=266 to=283)
seg (db=Seg db_id=seg from=315 to=332)
|
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ACD79_192_12
uncultured bacterium, Bacteria
|
Not on your lists |
comp(11085..12005)
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11085..12005 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKD28579.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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