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ACD79_212

Alias: ACD79_36632.32881.22

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD79_212_1

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1..117
DNA (117bp) protein (39aa)
seg (db=Seg db_id=seg from=1 to=20)
Uncharacterized protein {ECO:0000313|EMBL:EKD27393.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_212_2

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118..1149
DNA (1032bp) protein (344aa)
D-alanine-D-alanine ligase-like protein
Putative D-alanine--D-alanine ligase n=1 Tax=uncultured archaeon RepID=D1JF15_9ARCH (db=UNIREF evalue=3.0e-54 bit_score=216.0 identity=39.71 coverage=93.6046511627907)
seg (db=Seg db_id=seg from=328 to=343)
DALA_DALA_LIGASE_2 (db=PatternScan db_id=PS00844 from=264 to=292 evalue=0.0 interpro_id=IPR000291 interpro_description=D-alanine--D-alanine ligase/VANA/B/C, conserved site GO=Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716), Biological Process: peptidoglycan biosynthetic process (GO:0009252))
ACD79_212_3

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1196..2170
DNA (975bp) protein (325aa)
D-alanine-D-alanine ligase-like protein
seg (db=Seg db_id=seg from=54 to=70)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=113 to=322 evalue=1.8e-30)
Dala_Dala_lig_C (db=HMMPfam db_id=PF07478 from=137 to=322 evalue=5.9e-26 interpro_id=IPR011095 interpro_description=D-alanine--D-alanine ligase, C-terminal GO=Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716), Biological Process: peptidoglycan biosynthetic process (GO:0009252))
ACD79_212_4

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3533..4264
DNA (732bp) protein (244aa)
phospholipid/glycerol acyltransferase
Phospholipid/glycerol acyltransferase n=1 Tax=beta proteobacterium KB13 RepID=B6BWM6_9PROT (db=UNIREF evalue=5.0e-20 bit_score=101.0 identity=32.31 coverage=76.2295081967213)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
seg (db=Seg db_id=seg from=2 to=27)
ACD79_212_5

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4406..4987
DNA (582bp) protein (194aa)
hypothetical protein
hypothetical protein GobsU_24461 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C49B5 (db=UNIREF evalue=8.0e-29 bit_score=129.0 identity=36.42 coverage=87.1134020618557)
Uncharacterized protein {ECO:0000313|EMBL:EKD27390.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_212_6

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4987..5862
DNA (876bp) protein (292aa)
hypothetical protein
DUF1814 (db=HMMPfam db_id=PF08843 from=41 to=263 evalue=1.7e-21 interpro_id=IPR014942 interpro_description=Protein of unknown function DUF1814)
hypothetical protein alias=ACD79_C00216G00006,ACD79_36632.32881.22G0006,ACD79_36632.32881.22_6 id=126669 tax=ACD79 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
Uncharacterized protein {ECO:0000313|EMBL:EKD27391.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_212_7

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5852..6193
DNA (342bp) protein (114aa)
DEAD/DEAH box helicase
DEAD-box ATP dependent DNA helicase alias=ACD79_C00216G00007,ACD79_36632.32881.22_7,ACD79_36632.32881.22G0007 id=126678 tax=ACD79 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
DEAD-box ATP dependent DNA helicase {ECO:0000313|EMBL:EKD27392.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_212_8
Legionella norrlandica, Legionella, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

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6180..7532
DNA (1353bp) protein (451aa)
transcriptional regulator
transcriptional regulator
Putative transcriptional regulator n=1 Tax=Chlorobium limicola DSM 245 RepID=B3ED99_CHLL2 (db=UNIREF evalue=8.0e-155 bit_score=550.0 identity=66.43 coverage=92.0177383592018)
seg (db=Seg db_id=seg from=31 to=44)
ACD79_212_9

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7552..7743
DNA (192bp) protein (64aa)
hypothetical protein
ATP-dependent DNA helicase n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YTA4_9CHLB (db=UNIREF evalue=3.0e-10 bit_score=67.4 identity=64.58 coverage=73.4375)
seg (db=Seg db_id=seg from=49 to=63)
ATP-dependent DNA helicase {ECO:0000313|EMBL:EKD27362.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_212_10

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7744..7932
DNA (189bp) protein (63aa)
hypothetical protein
seg (db=Seg db_id=seg from=42 to=58)
DUF1156 (db=HMMPfam db_id=PF06634 from=15 to=59 evalue=8.0e-24 interpro_id=IPR009537 interpro_description=Protein of unknown function DUF1156)
hypothetical protein; K07445 putative DNA methylase alias=ACD79_C00216G00010,ACD79_36632.32881.22G0010,ACD79_36632.32881.22_10 id=126683 tax=ACD79 species=Magnetococcus marinus genus=Magnetococcus taxon_order=Magnetococcales taxon_class=Alphaproteobacteria phylum=Proteobacteria organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
ACD79_212_11

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comp(7943..8872)
DNA (930bp) protein (310aa)
hypothetical protein
seg (db=Seg db_id=seg from=103 to=113)
rluA_subfam: pseudouridine synthase, RluA (db=HMMTigr db_id=TIGR00005 from=15 to=309 evalue=5.3e-53 interpro_id=IPR006225 interpro_description=Pseudouridine synthase, RluC/RluD GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=78 to=309 evalue=3.4e-52 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
ACD79_212_12

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comp(8862..9797)
DNA (936bp) protein (312aa)
lipolytic protein g-D-S-l family (db=KEGG evalue=1.0e-07 bit_score=60.5 identity=37.65 coverage=25.3205128205128)
seg (db=Seg db_id=seg from=9 to=18)
seg (db=Seg db_id=seg from=148 to=159)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
ACD79_212_13

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10009..10398
DNA (390bp) protein (130aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=37)
Uncharacterized protein {ECO:0000313|EMBL:EKD27366.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_212_14

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10425..11270
DNA (846bp) protein (282aa)
seg (db=Seg db_id=seg from=261 to=277)
seg (db=Seg db_id=seg from=73 to=87)
seg (db=Seg db_id=seg from=4 to=33)
transmembrane_regions (db=TMHMM db_id=tmhmm from=182 to=199)
ACD79_212_15

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11324..12721
DNA (1398bp) protein (466aa)
seg (db=Seg db_id=seg from=205 to=209)
Phospholipase D/nuclease (db=superfamily db_id=SSF56024 from=11 to=124 evalue=2.4e-06)
no description (db=Gene3D db_id=G3DSA:3.30.870.10 from=13 to=170 evalue=5.2e-05)
Uncharacterized protein {ECO:0000313|EMBL:EKD27368.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_212_16

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comp(12784..13227)
DNA (444bp) protein (148aa)
response regulator receiver protein
CheY-like (db=superfamily db_id=SSF52172 from=2 to=129 evalue=3.6e-27 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=2 to=143 evalue=4.6e-26)
no description (db=HMMSmart db_id=SM00448 from=4 to=126 evalue=7.6e-21 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD79_212_17

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comp(13228..14307)
DNA (1080bp) protein (360aa)
PAS/PAC sensor signal transduction histidine kinase
coiled-coil (db=Coil db_id=coil from=212 to=233 evalue=NA)
SENSOR HISTIDINE KINASE-RELATED (db=HMMPanther db_id=PTHR23283 from=140 to=353 evalue=4.6e-58)
TWO COMPONENT HYBRID SENSOR AND REGULATOR (BACTERIOPHYTOCHROME) (db=HMMPanther db_id=PTHR23283:SF28 from=140 to=353 evalue=4.6e-58)
ACD79_212_18

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14387..15760
DNA (1374bp) protein (458aa)
tRNA modification GTPase TrmE
seg (db=Seg db_id=seg from=373 to=382)
seg (db=Seg db_id=seg from=164 to=176)
TRNA MODIFICATION GTPASE TRME (db=HMMPanther db_id=PTHR11649:SF15 from=42 to=457 evalue=1.2e-118)
ACD79_212_19

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comp(15765..16484)
DNA (720bp) protein (240aa)
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VPG4_9CLOT (db=UNIREF evalue=2.0e-47 bit_score=192.0 identity=46.41 coverage=96.25)
coiled-coil (db=Coil db_id=coil from=191 to=212 evalue=NA)
PSI_RSU (db=PatternScan db_id=PS01149 from=103 to=117 evalue=0.0 interpro_id=IPR018496 interpro_description=Pseudouridine synthase, RsuA and RluB/E/F, conserved site GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: intramolecular transferase activity (GO:0016866))
ACD79_212_20

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comp(16489..17517)
DNA (1029bp) protein (343aa)
ribonuclease D
3'-5' exonuclease n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DP07_DESVM (db=UNIREF evalue=5.0e-34 bit_score=148.0 identity=40.11 coverage=54.2274052478134)
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=5 to=218 evalue=5.7e-45 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
3_5_exonuc (db=HMMPfam db_id=PF01612 from=23 to=188 evalue=6.1e-30 interpro_id=IPR002562 interpro_description=3'-5' exonuclease GO=Molecular Function: nucleic acid binding (GO:0003676), Cellular Component: intracellular (GO:0005622), Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (GO:0006139), Molecular Function: 3'-5' exonuclease activity (GO:0008408))
ACD79_212_21

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17635..18063
DNA (429bp) protein (143aa)
seg (db=Seg db_id=seg from=112 to=125)
seg (db=Seg db_id=seg from=9 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=113 to=135)
Uncharacterized protein {ECO:0000313|EMBL:EKD27374.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_212_22

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18064..18717
DNA (654bp) protein (218aa)
NUDIX hydrolase
MUTT-NUDIX-RELATED (db=HMMPanther db_id=PTHR12992 from=1 to=152 evalue=1.7e-32)
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=17 to=214 evalue=7.2e-29 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
Nudix (db=superfamily db_id=SSF55811 from=13 to=217 evalue=3.2e-16 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
ACD79_212_23

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comp(18698..19267)
DNA (570bp) protein (190aa)
oxidoreductase
seg (db=Seg db_id=seg from=131 to=141)
FMN-dependent nitroreductase-like (db=superfamily db_id=SSF55469 from=1 to=186 evalue=3.8e-37 interpro_id=IPR000415 interpro_description=Nitroreductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491))
Nitroreductase (db=HMMPfam db_id=PF00881 from=8 to=150 evalue=1.3e-27 interpro_id=IPR000415 interpro_description=Nitroreductase-like GO=Molecular Function: oxidoreductase activity (GO:0016491))
ACD79_212_24

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comp(19264..20055)
DNA (792bp) protein (264aa)
tRNA/rRNA methyltransferase SpoU
RNA-METHYLASE-RELATED (db=HMMPanther db_id=PTHR12029:SF8 from=75 to=263 evalue=5.8e-63)
RNA METHYLTRANSFERASE (db=HMMPanther db_id=PTHR12029 from=75 to=263 evalue=5.8e-63)
no description (db=Gene3D db_id=G3DSA:3.40.1280.10 from=109 to=260 evalue=3.2e-39)
ACD79_212_25

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comp(20149..21969)
DNA (1821bp) protein (607aa)
seg (db=Seg db_id=seg from=340 to=352)
seg (db=Seg db_id=seg from=5 to=23)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=23)
coiled-coil (db=Coil db_id=coil from=202 to=223 evalue=NA)
ACD79_212_26

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22125..22229
DNA (105bp) protein (35aa)
22125..22229 + (rbs_motif=GGAG/GAGG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKD27379.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD79_212_27

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comp(22223..23332)
DNA (1110bp) protein (370aa)
twitching motility protein
T2SP_E (db=PatternScan db_id=PS00662 from=200 to=214 evalue=0.0 interpro_id=IPR001482 interpro_description=Type II secretion system protein E GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: intracellular (GO:0005622), Biological Process: transport (GO:0006810))
pilT_fam: twitching motility protein (db=HMMTigr db_id=TIGR01420 from=8 to=352 evalue=7.7e-139 interpro_id=IPR006321 interpro_description=Pilus retraction protein PilT GO=Molecular Function: ATP binding (GO:0005524), Biological Process: transport (GO:0006810))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=106 to=355 evalue=1.2e-57)
ACD79_212_28

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23518..25125
DNA (1608bp) protein (536aa)
thiC; thiamine biosynthesis protein ThiC
thiC; thiamine biosynthesis protein ThiC
Phosphomethylpyrimidine synthase n=2 Tax=Bacillus subtilis group RepID=THIC_BACLD (db=UNIREF evalue=0.0 bit_score=655.0 identity=64.62 coverage=90.1119402985075)
seg (db=Seg db_id=seg from=412 to=427)
ACD79_212_29

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25129..26232
DNA (1104bp) protein (368aa)
Biotin synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=BIOB_MAGSM (db=UNIREF evalue=2.0e-81 bit_score=306.0 identity=46.6 coverage=86.6847826086957)
biotin synthase (EC:2.8.1.6)
biotin synthase (EC:2.8.1.6)
seg (db=Seg db_id=seg from=126 to=138)
ACD79_212_30

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26334..26669
DNA (336bp) protein (112aa)
coiled-coil (db=Coil db_id=coil from=59 to=80 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKD27383.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 1-30 of 35 in total

View Taxonomy