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ACD79_595

Alias: ACD79_37599.16751.21

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD79_595_1

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comp(3..377)
DNA (375bp) protein (125aa)
phosphatidylglycerophosphatase (EC:3.1.3.27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=81 to=103)
seg (db=Seg db_id=seg from=43 to=59)
transmembrane_regions (db=TMHMM db_id=tmhmm from=44 to=66)
ACD79_595_2

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comp(413..2026)
DNA (1614bp) protein (538aa)
protein translocase subunit yidC
transmembrane_regions (db=TMHMM db_id=tmhmm from=319 to=341)
transmembrane_regions (db=TMHMM db_id=tmhmm from=501 to=523)
transmembrane_regions (db=TMHMM db_id=tmhmm from=459 to=481)
ACD79_595_3

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comp(2050..2256)
DNA (207bp) protein (69aa)
hypothetical protein
DUF37 (db=HMMPfam db_id=PF01809 from=1 to=68 evalue=4.0e-28 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
TIGR00278: conserved hypothetical protein Y (db=HMMTigr db_id=TIGR00278 from=5 to=68 evalue=1.9e-16 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
Q38WL1_LACSK_Q38WL1; (db=BlastProDom db_id=PD004225 from=16 to=68 evalue=3.0e-14 interpro_id=IPR002696 interpro_description=Protein of unknown function DUF37)
ACD79_595_4

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comp(2253..2615)
DNA (363bp) protein (121aa)
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=10 to=115 evalue=4.1e-20 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold)
Ribonuclease_P (db=HMMPfam db_id=PF00825 from=6 to=110 evalue=1.4e-17 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
no description (db=Gene3D db_id=G3DSA:3.30.230.10 from=1 to=115 evalue=1.8e-17 interpro_id=IPR014721 interpro_description=Ribosomal protein S5 domain 2-type fold, subgroup)
rnpA: ribonuclease P protein component (db=HMMTigr db_id=TIGR00188 from=4 to=117 evalue=1.7e-09 interpro_id=IPR000100 interpro_description=Ribonuclease P GO=Molecular Function: tRNA binding (GO:0000049), Molecular Function: ribonuclease P activity (GO:0004526), Biological Process: tRNA processing (GO:0008033))
ACD79_595_5

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comp(2621..2779)
DNA (159bp) protein (53aa)
rpmH; 50S ribosomal protein L34
RIBOSOMAL_L34 (db=PatternScan db_id=PS00784 from=2 to=21 evalue=0.0 interpro_id=IPR020939 interpro_description=Ribosomal protein L34, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L34 (db=HMMPfam db_id=PF00468 from=1 to=44 evalue=1.2e-22 interpro_id=IPR000271 interpro_description=Ribosomal protein L34 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpmH_bact: ribosomal protein L34 (db=HMMTigr db_id=TIGR01030 from=1 to=44 evalue=2.9e-21 interpro_id=IPR000271 interpro_description=Ribosomal protein L34 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD79_595_6

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comp(2932..3393)
DNA (462bp) protein (154aa)
TPR_2 (db=HMMPfam db_id=PF07719 from=84 to=113 evalue=2.9e-05 interpro_id=IPR013105 interpro_description=Tetratricopeptide TPR2)
no description (db=HMMSmart db_id=SM00028 from=81 to=114 evalue=0.012 interpro_id=IPR019734 interpro_description=Tetratricopeptide repeat)
TPR (db=ProfileScan db_id=PS50005 from=81 to=114 evalue=9.588 interpro_id=IPR019734 interpro_description=Tetratricopeptide repeat)
TPR_REGION (db=ProfileScan db_id=PS50293 from=81 to=114 evalue=9.968 interpro_id=IPR013026 interpro_description=Tetratricopeptide repeat-containing)
ACD79_595_7

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3783..5909
DNA (2127bp) protein (709aa)
beta-glucuronidase (EC:3.2.1.31); K01195 beta-glucuronidase [EC:3.2.1.31] (db=KEGG evalue=2.0e-18 bit_score=98.2 identity=26.65 coverage=45.9802538787024)
transmembrane_regions (db=TMHMM db_id=tmhmm from=128 to=150)
seg (db=Seg db_id=seg from=233 to=250)
seg (db=Seg db_id=seg from=136 to=149)
expressed in proteomics kelly wrighton (1/6/13)
ACD79_595_8

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6026..7585
DNA (1560bp) protein (520aa)
Membrane-associated methyl-accepting chemotaxis protein with HAMP domain
methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C38B0 (db=UNIREF evalue=7.0e-33 bit_score=145.0 identity=34.09 coverage=56.3461538461538)
seg (db=Seg db_id=seg from=247 to=262)
coiled-coil (db=Coil db_id=coil from=247 to=268 evalue=NA)
ACD79_595_9

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10541..10759
DNA (219bp) protein (73aa)
multi-sensor hybrid histidine kinase
CheY-like (db=superfamily db_id=SSF52172 from=1 to=63 evalue=4.3e-10 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=1 to=63 evalue=4.9e-07)
Response_reg (db=HMMPfam db_id=PF00072 from=1 to=59 evalue=3.2e-06 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
ACD79_595_10

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10892..13678
DNA (2787bp) protein (929aa)
multi-sensor hybrid histidine kinase rbh
multi-sensor hybrid histidine kinase rbh
Sensor protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FEV5_DESAA (db=UNIREF evalue=5.0e-127 bit_score=459.0 identity=43.97 coverage=59.6340150699677)
coiled-coil (db=Coil db_id=coil from=532 to=556 evalue=NA)
ACD79_595_11

Not on your lists

comp(13683..14651)
DNA (969bp) protein (323aa)
magnesium transporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=288 to=310)
transmembrane_regions (db=TMHMM db_id=tmhmm from=251 to=273)
seg (db=Seg db_id=seg from=196 to=210)
ACD79_595_12

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14843..16552
DNA (1710bp) protein (570aa)
alpha-amylase
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1D6_9BACT (db=UNIREF evalue=9.0e-90 bit_score=335.0 identity=37.88 coverage=91.5789473684211)
seg (db=Seg db_id=seg from=16 to=39)
seg (db=Seg db_id=seg from=282 to=298)
ACD79_595_13

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16586..16789
DNA (204bp) protein (68aa)
Malto-oligosyltrehalose trehalohydrolase n=2 Tax=Arthrospira RepID=B5W5G4_SPIMA (db=UNIREF evalue=1.0e-09 bit_score=65.5 identity=44.78 coverage=95.5882352941177)
maltooligosyl trehalose hydrolase (EC:3.2.1.141)
E set domains (db=superfamily db_id=SSF81296 from=2 to=65 evalue=6.8e-10 interpro_id=IPR014756 interpro_description=Immunoglobulin E-set)
CBM_48 (db=HMMPfam db_id=PF02922 from=4 to=66 evalue=1.3e-09 interpro_id=IPR004193 interpro_description=Glycoside hydrolase, family 13, N-terminal GO=Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553), Biological Process: carbohydrate metabolic process (GO:0005975))
Displaying 13 items

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