ggKbase home page

ACD7_34

Alias: ACD7_706.42086.77

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD7_34_1

Not on your lists


224..670
DNA (447bp) protein (149aa)
rplI; 50S ribosomal protein L9
RIBOSOMAL_L9 (db=PatternScan db_id=PS00651 from=13 to=40 evalue=0.0 interpro_id=IPR020070 interpro_description=Ribosomal protein L9, N-terminal)
50S RIBOSOMAL PROTEIN L9 (db=HMMPanther db_id=PTHR21368 from=1 to=147 evalue=5.2e-35 interpro_id=IPR000244 interpro_description=Ribosomal protein L9 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L9 (db=HMMPanther db_id=PTHR21368:SF17 from=1 to=147 evalue=5.2e-35)
ACD7_34_2

Not on your lists

727..2361
DNA (1635bp) protein (545aa)
CTP synthase n=3 Tax=Pyrococcus RepID=PYRG_PYRAB (db=UNIREF evalue=9.0e-164 bit_score=580.0 identity=53.7 coverage=96.3302752293578)
pyrG; CTP synthetase (EC:6.3.4.2)
pyrG; CTP synthetase (EC:6.3.4.2)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
ACD7_34_3
GWE1_OD1_ACD7_35_17, Moranbacteria, Parcubacteria, Bacteria

Not on your lists


comp(2597..2884)
DNA (288bp) protein (96aa)
rpmA; 50S ribosomal protein L27
L27: ribosomal protein L27 (db=HMMTigr db_id=TIGR00062 from=1 to=90 evalue=5.6e-34 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L27 (db=HMMPfam db_id=PF01016 from=2 to=89 evalue=1.7e-31 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L27 (db=HMMPanther db_id=PTHR15893 from=8 to=92 evalue=9.6e-31 interpro_id=IPR001684 interpro_description=Ribosomal protein L27 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD7_34_4

Not on your lists

2995..3438
DNA (444bp) protein (148aa)
Hypothetical secreted protein n=1 Tax=uncultured archaeon RepID=D1JF36_9ARCH (db=UNIREF evalue=1.0e-08 bit_score=62.0 identity=59.18 coverage=32.4324324324324)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=25 to=44)
Ada DNA repair protein, N-terminal domain (N-Ada 10) (db=superfamily db_id=SSF57884 from=89 to=147 evalue=8.7e-06 interpro_id=IPR004026 interpro_description=Ada DNA repair, metal-binding GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA repair (GO:0006281), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: methyltransferase activity (GO:0008168), Molecular Function: zinc ion binding (GO:0008270))
ACD7_34_5
GWF1_OD1_35_5, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

3643..3984
DNA (342bp) protein (114aa)
hypothetical protein
RNA-binding protein (Contains KH domain)-like protein (Fragment) n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSZ2_9BACT (db=UNIREF evalue=2.0e-18 bit_score=94.7 identity=62.67 coverage=64.9122807017544)
KH_2 (db=HMMPfam db_id=PF07650 from=44 to=84 evalue=3.7e-05 interpro_id=IPR004044 interpro_description=K Homology, type 2 GO=Molecular Function: RNA binding (GO:0003723))
Uncharacterized protein {ECO:0000313|EMBL:KKP81850.1}; TaxID=1618716 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWF1_35_5.;"
ACD7_34_6

Not on your lists

comp(4315..4866)
DNA (552bp) protein (184aa)
Conserved protein YuiC n=1 Tax=Bacillus pumilus ATCC 7061 RepID=B4AHD2_BACPU (db=UNIREF evalue=7.0e-17 bit_score=90.1 identity=48.35 coverage=46.195652173913)
cell wall-binding protein
3D (db=HMMPfam db_id=PF06725 from=129 to=178 evalue=3.1e-08 interpro_id=IPR010611 interpro_description=3D GO=Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553), Biological Process: peptidoglycan turnover (GO:0009254), Cellular Component: outer membrane (GO:0019867))
Protein YuiC {ECO:0000313|EMBL:EKE20642.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_34_7

Not on your lists

comp(4877..5005)
DNA (129bp) protein (43aa)
seg (db=Seg db_id=seg from=19 to=30)
Uncharacterized protein {ECO:0000313|EMBL:EKE20643.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_34_8

Not on your lists

5835..6443
DNA (609bp) protein (203aa)
family 2 glycosyl transferase
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=4 to=202 evalue=1.2e-28)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=4 to=195 evalue=3.5e-26)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=7 to=157 evalue=7.2e-20 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD7_34_9

Not on your lists

6651..8438
DNA (1788bp) protein (596aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=423 to=445)
transmembrane_regions (db=TMHMM db_id=tmhmm from=393 to=410)
transmembrane_regions (db=TMHMM db_id=tmhmm from=361 to=383)
ACD7_34_10

Not on your lists

8459..9436
DNA (978bp) protein (326aa)
glycosyl transferase
seg (db=Seg db_id=seg from=308 to=322)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=4 to=217 evalue=6.2e-46)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=4 to=215 evalue=1.7e-43)
ACD7_34_11

Not on your lists

comp(9433..9810)
DNA (378bp) protein (126aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=105 to=124)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=69)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
seg (db=Seg db_id=seg from=77 to=88)
ACD7_34_12

Not on your lists

comp(9821..10615)
DNA (795bp) protein (265aa)
glycosyltransferase teichoic acid biosynthesis protein
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=3 to=257 evalue=2.0e-22)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=3 to=225 evalue=4.4e-17)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=9 to=138 evalue=5.0e-12 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD7_34_13
GWE1_OD1_ACD7_35_17, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(10612..10971)
DNA (360bp) protein (120aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
seg (db=Seg db_id=seg from=74 to=92)
transmembrane_regions (db=TMHMM db_id=tmhmm from=36 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=92)
ACD7_34_14
GWE1_OD1_ACD7_35_17, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(10976..11656)
DNA (681bp) protein (227aa)
glycosyl transferase family 2
GLYCOSYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR10859 from=13 to=208 evalue=1.1e-38)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=226 evalue=7.8e-33)
Glycos_transf_2 (db=HMMPfam db_id=PF00535 from=9 to=164 evalue=1.2e-24 interpro_id=IPR001173 interpro_description=Glycosyl transferase, family 2)
ACD7_34_15

Not on your lists

11805..12827
DNA (1023bp) protein (341aa)
spsJ2; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
spsJ2; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase n=1 Tax=Geobacillus stearothermophilus RepID=Q6WNH7_BACST (db=UNIREF evalue=8.0e-113 bit_score=410.0 identity=60.53 coverage=97.9472140762463)
dTDP_gluc_dehyt: dTDP-glucose 4,6-deh (db=HMMTigr db_id=TIGR01181 from=2 to=319 evalue=7.7e-196 interpro_id=IPR005888 interpro_description=dTDP-glucose 4,6-dehydratase GO=Molecular Function: dTDP-glucose 4,6-dehydratase activity (GO:0008460), Biological Process: nucleotide-sugar metabolic process (GO:0009225))
ACD7_34_16
GWE2_OD1_35_164, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

12895..13851
DNA (957bp) protein (319aa)
dTDP 4-dehydrorhamnose reductase
RmlD_sub_bind (db=HMMPfam db_id=PF04321 from=3 to=310 evalue=7.1e-68 interpro_id=IPR005913 interpro_description=dTDP-4-dehydrorhamnose reductase GO=Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=315 evalue=2.8e-65)
DTDP-DEHYDRORHAMNOSE DEHYDROGENASE (db=HMMPanther db_id=PTHR10491 from=1 to=313 evalue=4.0e-45)
ACD7_34_17
GWE1_OD1_ACD7_35_17, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

13878..14063
DNA (186bp) protein (62aa)
seg (db=Seg db_id=seg from=7 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
Uncharacterized protein {ECO:0000313|EMBL:KKP68316.1}; TaxID=1618707 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWE1_35_17.;"
ACD7_34_18

Not on your lists

14266..14469
DNA (204bp) protein (68aa)
14266..14469 + (rbs_motif=TAA rbs_spacer=15bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE20629.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_34_19

Not on your lists

comp(14388..16607)
DNA (2220bp) protein (740aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE20630.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein alias=ACD7_C00034G00019,ACD7_706.42086.77_19,ACD7_706.42086.77G0019 id=129976 tax=ACD7 species=Anaeromyxobacter sp. Fw109-5 genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria organism_group=OD1-i organism_desc=OD1-i
ACD7_34_20

Not on your lists

comp(16665..18746)
DNA (2082bp) protein (694aa)
seg (db=Seg db_id=seg from=3 to=14)
seg (db=Seg db_id=seg from=182 to=195)
seg (db=Seg db_id=seg from=599 to=611)
Uncharacterized protein {ECO:0000313|EMBL:EKE20631.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_34_21

Not on your lists

18917..19063
DNA (147bp) protein (49aa)
18917..19063 + (rbs_motif=AAAA rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE20632.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD7_34_22

Not on your lists


comp(19225..19572)
DNA (348bp) protein (116aa)
rplT; 50S ribosomal protein L20
RIBOSOMAL_L20 (db=PatternScan db_id=PS00937 from=54 to=70 evalue=0.0 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
rplT_bact: ribosomal protein L20 (db=HMMTigr db_id=TIGR01032 from=1 to=114 evalue=4.1e-47 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
Ribosomal_L20 (db=HMMPfam db_id=PF00453 from=2 to=108 evalue=9.1e-38 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
ACD7_34_23

Not on your lists


comp(19652..19846)
DNA (195bp) protein (65aa)
seg (db=Seg db_id=seg from=3 to=15)
L35p-like (db=superfamily db_id=SSF143034 from=2 to=62 evalue=8.4e-10)
Ribosomal_L35p (db=HMMPfam db_id=PF01632 from=2 to=60 evalue=2.3e-06 interpro_id=IPR021137 interpro_description=Ribosomal protein L35 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L35 (db=HAMAP db_id=MF_00514 from=1 to=64 evalue=11.534 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
ACD7_34_24

Not on your lists

comp(19977..20519)
DNA (543bp) protein (181aa)
translation initiation factor IF-3
infC: translation initiation factor IF-3 (db=HMMTigr db_id=TIGR00168 from=19 to=180 evalue=2.4e-37 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
TRANSLATION INITIATION FACTOR IF-3 (db=HMMPanther db_id=PTHR10938 from=34 to=180 evalue=3.6e-32 interpro_id=IPR001288 interpro_description=Translation initiation factor 3 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
IF3_N (db=HMMPfam db_id=PF05198 from=16 to=87 evalue=6.4e-27 interpro_id=IPR019814 interpro_description=Translation initiation factor 3, N-terminal GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
ACD7_34_25

Not on your lists

comp(21081..21530)
DNA (450bp) protein (150aa)
single-stranded DNA-binding protein
seg (db=Seg db_id=seg from=128 to=142)
seg (db=Seg db_id=seg from=88 to=102)
SSRP (db=PatternScan db_id=PS01317 from=22 to=34 evalue=0.0 interpro_id=IPR020081 interpro_description=SsrA-binding protein, conserved site)
ACD7_34_26
GWE1_OD1_ACD7_35_17, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(22445..22765)
DNA (321bp) protein (107aa)
22445..22765 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:KKP68322.1}; TaxID=1618707 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWE1_35_17.;"
ACD7_34_27
GWE1_OD1_ACD7_35_17, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(22927..23160)
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JKJ8_9BACT (db=UNIREF evalue=5.0e-13 bit_score=76.6 identity=48.05 coverage=94.8717948717949)
excinuclease ABC subunit C
GIY-YIG (db=HMMPfam db_id=PF01541 from=1 to=65 evalue=5.8e-09 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
Excinuclease ABC C subunit domain-containing protein {ECO:0000313|EMBL:KKP68323.1}; TaxID=1618707 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWE1_35_17.
ACD7_34_28

Not on your lists

23818..24264
DNA (447bp) protein (149aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=113 to=135)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=98)
transmembrane_regions (db=TMHMM db_id=tmhmm from=47 to=66)
ACD7_34_29

Not on your lists

24375..25067
DNA (693bp) protein (231aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=170 to=183)
seg (db=Seg db_id=seg from=152 to=167)
seg (db=Seg db_id=seg from=111 to=121)
ACD7_34_30

Not on your lists

25342..25947
DNA (606bp) protein (202aa)
Predicted metal-dependent hydrolase
Metal-dependent hydrolase n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LAY5_9FIRM (db=UNIREF evalue=1.0e-27 bit_score=126.0 identity=42.18 coverage=71.2871287128713)
seg (db=Seg db_id=seg from=94 to=109)
DUF45 (db=HMMPfam db_id=PF01863 from=99 to=198 evalue=3.3e-38 interpro_id=IPR002725 interpro_description=Protein of unknown function DUF45)
Displaying items 1-30 of 48 in total

View Taxonomy