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ACD80_13

Alias: ACD80_38589.52330.20

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Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD80_13_1
ACD80, SR1, Bacteria

Not on your lists

3..2177
DNA (2175bp) protein (725aa)
hypothetical protein
seg (db=Seg db_id=seg from=110 to=118)
seg (db=Seg db_id=seg from=404 to=425)
seg (db=Seg db_id=seg from=667 to=692)
ACD80_13_2
ACD80, SR1, Bacteria

Not on your lists

2257..3138
DNA (882bp) protein (294aa)
seg (db=Seg db_id=seg from=121 to=133)
seg (db=Seg db_id=seg from=80 to=86)
seg (db=Seg db_id=seg from=45 to=55)
seg (db=Seg db_id=seg from=24 to=37)
ACD80_13_3
ACD80, SR1, Bacteria

Not on your lists

comp(3171..4607)
DNA (1437bp) protein (479aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=49 to=71)
seg (db=Seg db_id=seg from=444 to=458)
seg (db=Seg db_id=seg from=45 to=67)
seg (db=Seg db_id=seg from=3 to=29)
ACD80_13_4
ACD80, SR1, Bacteria

Not on your lists

comp(4631..6406)
DNA (1776bp) protein (592aa)
4631..6406 - (rbs_motif=TTATTA rbs_spacer=8bp)
hypothetical protein Tax=ACD80
hypothetical protein
ACD80_13_5
ACD80, SR1, Bacteria

Not on your lists

comp(6505..7263)
DNA (759bp) protein (253aa)
seg (db=Seg db_id=seg from=14 to=31)
seg (db=Seg db_id=seg from=197 to=210)
seg 14..31 Tax=ACD80
ACD80_13_6
ACD80, SR1, Bacteria

Not on your lists

comp(7296..8660)
DNA (1365bp) protein (455aa)
sodium/pantothenate symporter
transmembrane_regions (db=TMHMM db_id=tmhmm from=152 to=174)
transmembrane_regions (db=TMHMM db_id=tmhmm from=181 to=203)
transmembrane_regions (db=TMHMM db_id=tmhmm from=218 to=240)
ACD80_13_7
ACD80, SR1, Bacteria

Not on your lists

comp(8816..9277)
DNA (462bp) protein (154aa)
seg (db=Seg db_id=seg from=73 to=80)
seg (db=Seg db_id=seg from=128 to=141)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg 73..80 Tax=ACD80
ACD80_13_8
ACD80, SR1, Bacteria

Not on your lists

comp(9317..9778)
DNA (462bp) protein (154aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions 20..42 Tax=ACD80
ACD80_13_9
ACD80, SR1, Bacteria

Not on your lists

comp(9818..10492)
DNA (675bp) protein (225aa)
seg (db=Seg db_id=seg from=59 to=67)
seg (db=Seg db_id=seg from=206 to=223)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
seg 59..67 Tax=ACD80
ACD80_13_10
unknown

Not on your lists


comp(10535..11332)
DNA (798bp) protein (266aa)
50S ribosomal protein L7/L12 n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B21A2 (db=UNIREF evalue=6.0e-21 bit_score=104.0 identity=43.75 coverage=46.6165413533835)
seg (db=Seg db_id=seg from=53 to=73)
seg (db=Seg db_id=seg from=25 to=39)
coiled-coil (db=Coil db_id=coil from=79 to=110 evalue=NA)
ACD80_13_11
ACD80, SR1, Bacteria

Not on your lists

11670..12608
DNA (939bp) protein (313aa)
seg (db=Seg db_id=seg from=100 to=116)
seg (db=Seg db_id=seg from=287 to=297)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=287 to=301)
ACD80_13_12
ACD80, SR1, Bacteria

Not on your lists

comp(12871..13362)
DNA (492bp) protein (164aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=46)
seg (db=Seg db_id=seg from=29 to=46)
seg 29..46 Tax=ACD80
ACD80_13_13
ACD80, SR1, Bacteria

Not on your lists

comp(13526..14824)
DNA (1299bp) protein (433aa)
hypothetical protein
seg (db=Seg db_id=seg from=149 to=160)
lysidine_TilS_N: tRNA(Ile)-lysidine s (db=HMMTigr db_id=TIGR02432 from=37 to=223 evalue=3.9e-40 interpro_id=IPR012795 interpro_description=Lysidine-tRNA(Ile) synthetase, N-terminal GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA processing (GO:0008033), Molecular Function: ligase activity, forming carbon-nitrogen bonds (GO:0016879))
ATP_bind_3 (db=HMMPfam db_id=PF01171 from=37 to=220 evalue=1.9e-36 interpro_id=IPR011063 interpro_description=PP-loop)
ACD80_13_14
ACD80, SR1, Bacteria

Not on your lists

14914..15435
DNA (522bp) protein (174aa)
DUF177 (db=HMMPfam db_id=PF02620 from=68 to=156 evalue=1.3e-07 interpro_id=IPR003772 interpro_description=Protein of unknown function DUF177)
DUF177 Tax=ACD80
hypothetical protein
ACD80_13_15
ACD80, SR1, Bacteria

Not on your lists

15598..16041
DNA (444bp) protein (148aa)
seg (db=Seg db_id=seg from=100 to=115)
seg (db=Seg db_id=seg from=82 to=94)
seg 82..94 Tax=ACD80
ACD80_13_16
ACD80, SR1, Bacteria

Not on your lists

comp(16247..16564)
DNA (318bp) protein (106aa)
seg (db=Seg db_id=seg from=89 to=102)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=60 to=82)
seg 89..102 Tax=ACD80
ACD80_13_17
ACD80, SR1, Bacteria

Not on your lists

comp(16653..17762)
DNA (1110bp) protein (370aa)
Pseudouridine synthase
seg (db=Seg db_id=seg from=13 to=24)
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=86 to=325 evalue=3.0e-50 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
RIBOSOMAL PSEUDOURIDINE SYNTHASE (db=HMMPanther db_id=PTHR10436 from=1 to=329 evalue=6.6e-42)
tRNA-related Jill Banfield (11/16/12)
ACD80_13_18
ACD80, SR1, Bacteria

Not on your lists

18184..18450
DNA (267bp) protein (89aa)
GIY-YIG (db=HMMPfam db_id=PF01541 from=1 to=66 evalue=2.6e-05 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG 1..66 Tax=ACD80
ACD80_13_19
ACD80, SR1, Bacteria

Not on your lists

18601..18954
DNA (354bp) protein (118aa)
seg (db=Seg db_id=seg from=59 to=71)
seg 59..71 Tax=ACD80
ACD80_13_20
ACD80, SR1, Bacteria

Not on your lists

19008..19865
DNA (858bp) protein (286aa)
putative replication protein (db=KEGG evalue=6.0e-09 bit_score=65.1 identity=24.09 coverage=87.7622377622378)
seg (db=Seg db_id=seg from=273 to=285)
putative replication protein alias=ACD80_38589.52330.20G0020,ACD80_38589.52330.20_20,ACD80_C00013G00020 id=132160 tax=ACD80 species=Acinetobacter baumannii genus=Acinetobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=SR1
putative replication protein Tax=ACD80
ACD80_13_21
ACD80, SR1, Bacteria

Not on your lists

20015..20287
DNA (273bp) protein (91aa)
20015..20287 + (rbs_motif=TTTATA rbs_spacer=15bp)
hypothetical protein Tax=ACD80
hypothetical protein
ACD80_13_22
ACD80, SR1, Bacteria

Not on your lists

comp(20289..23573)
DNA (3285bp) protein (1095aa)
helicase
helicase
possible helicase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4451 (db=UNIREF evalue=5.0e-170 bit_score=602.0 identity=35.45 coverage=89.4977168949772)
seg (db=Seg db_id=seg from=1046 to=1056)
ACD80_13_23
ACD80, SR1, Bacteria

Not on your lists

comp(23527..23646)
DNA (120bp) protein (40aa)
seg (db=Seg db_id=seg from=2 to=17)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=36)
seg 2..17 Tax=ACD80
ACD80_13_24
ACD80, SR1, Bacteria

Not on your lists

comp(23670..23759)
DNA (90bp) protein (30aa)
23670..23759 - (rbs_motif=TTTATA rbs_spacer=15bp)
hypothetical protein Tax=ACD80
ACD80_13_25
unknown

Not on your lists

23811..24416
DNA (606bp) protein (202aa)
integrase
Integrase family protein n=2 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GVK1_9DELT (db=UNIREF evalue=4.0e-22 bit_score=107.0 identity=39.41 coverage=76.7326732673267)
seg (db=Seg db_id=seg from=9 to=23)
DNA breaking-rejoining enzymes (db=superfamily db_id=SSF56349 from=4 to=200 evalue=1.8e-29 interpro_id=IPR011010 interpro_description=DNA breaking-rejoining enzyme, catalytic core GO=Molecular Function: DNA binding (GO:0003677))
ACD80_13_26
ACD80, SR1, Bacteria

Not on your lists

comp(24430..24621)
DNA (192bp) protein (64aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
transmembrane_regions 21..40 Tax=ACD80
ACD80_13_27
ACD80, SR1, Bacteria

Not on your lists

comp(24808..25287)
DNA (480bp) protein (160aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=121 to=143)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=80)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
seg (db=Seg db_id=seg from=128 to=139)
ACD80_13_28

Not on your lists

comp(25330..26769)
DNA (1440bp) protein (480aa)
Type II restriction enzyme n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C2KA81_9FLAO (db=UNIREF evalue=1.0e-150 bit_score=536.0 identity=55.23 coverage=98.9583333333333)
type II restriction enzyme (EC:3.1.21.4)
type II restriction enzyme (EC:3.1.21.4)
Q9K091_NEIMB_Q9K091; (db=BlastProDom db_id=PD143075 from=7 to=463 evalue=4.0e-117)
ACD80_13_29
ACD80, SR1, Bacteria

Not on your lists

comp(26776..27846)
DNA (1071bp) protein (357aa)
moodification methylase HgaIA
moodification methylase HgaIA
DNA (Cytosine-5-)-methyltransferase n=1 Tax=Leuconostoc mesenteroides subsp. cremoris ATCC 19254 RepID=C2KI16_LEUMC (db=UNIREF evalue=5.0e-94 bit_score=348.0 identity=51.92 coverage=94.3977591036414)
seg (db=Seg db_id=seg from=113 to=125)
cystine - methionine metabolism Jill Banfield (11/16/12)
ACD80_13_30

Not on your lists

comp(27890..28966)
DNA (1077bp) protein (359aa)
Cytosine-specific methyltransferase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C2KA82_9FLAO (db=UNIREF evalue=1.0e-110 bit_score=402.0 identity=56.9 coverage=96.3788300835655)
DNA-cytosine methyltransferase (EC:2.1.1.37)
DNA-cytosine methyltransferase (EC:2.1.1.37)
seg (db=Seg db_id=seg from=259 to=270)
Similar to previous Jill Banfield (11/16/12)
Displaying items 1-30 of 49 in total

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