Alias: ACD80_5044.33366.19
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD80_14_1
ACD80, SR1, Bacteria
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Not on your lists |
comp(228..854)
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hypothetical protein (db=KEGG evalue=3.0e-08 bit_score=62.0 identity=27.54 coverage=91.866028708134)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
hypothetical protein alias=ACD80_C00014G00001,ACD80_5044.33366.19G0001,ACD80_5044.33366.19_1 id=132190 tax=ACD80 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown organism_group=SR1
hypothetical protein Tax=ACD80
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ACD80_14_2
unknown
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Not on your lists |
982..1479
|
hypothetical protein
Putative uncharacterized protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A5G4_THEAQ (db=UNIREF evalue=5.0e-19 bit_score=96.7 identity=34.62 coverage=77.710843373494)
transmembrane_regions (db=TMHMM db_id=tmhmm from=16 to=38)
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ACD80_14_3
ACD80, SR1, Bacteria
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Not on your lists |
1504..1932
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coiled-coil (db=Coil db_id=coil from=89 to=110 evalue=NA)
coiled-coil 89..110 Tax=ACD80
hypothetical protein
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ACD80_14_4
ACD80, SR1, Bacteria
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Not on your lists |
1990..3255
|
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=76)
seg (db=Seg db_id=seg from=23 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=80 to=102)
|
8+ transmembrane domains
Jill Banfield
(11/16/12)
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ACD80_14_5
unknown
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Not on your lists |
3291..4670
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UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87C66 (db=UNIREF evalue=4.0e-21 bit_score=106.0 identity=26.48 coverage=69.7826086956522)
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIAMINOPIMELATE--D-ALANYL-D- ALANYL LIGASE (db=HMMPanther db_id=PTHR23135:SF3 from=31 to=439 evalue=1.2e-29 interpro_id=IPR005863 interpro_description=UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: regulation of cell shape (GO:0008360), Molecular Function: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activ
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=31 to=439 evalue=1.2e-29)
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ACD80_14_6
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(4799..6103)
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seg (db=Seg db_id=seg from=425 to=434)
seg (db=Seg db_id=seg from=333 to=343)
seg (db=Seg db_id=seg from=300 to=311)
transmembrane_regions (db=TMHMM db_id=tmhmm from=394 to=416)
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7 transmembrane domains
Jill Banfield
(11/16/12)
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ACD80_14_7
ACD80, SR1, Bacteria
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Not on your lists |
comp(6159..8618)
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hypothetical protein
seg (db=Seg db_id=seg from=362 to=379)
seg (db=Seg db_id=seg from=602 to=629)
seg (db=Seg db_id=seg from=546 to=560)
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α-l-glutamate ligase, the enzyme that caps the γ-glutamyl tail of the hydride carrier coenzyme F420
Jill Banfield
(11/16/12)
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ACD80_14_8
ACD80, SR1, Bacteria
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Not on your lists |
8825..9775
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seg (db=Seg db_id=seg from=14 to=33)
seg 14..33 Tax=ACD80
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ACD80_14_9
ACD80, SR1, Bacteria
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Not on your lists |
9911..10111
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9911..10111 + (rbs_motif=TTA rbs_spacer=5bp)
hypothetical protein Tax=ACD80
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ACD80_14_10
ACD80, SR1, Bacteria
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Not on your lists |
10086..10352
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||
ACD80_14_11
ACD80, SR1, Bacteria
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Not on your lists |
10464..11966
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hypothetical protein
coiled-coil (db=Coil db_id=coil from=327 to=348 evalue=NA)
cysS: cysteinyl-tRNA synthetase (db=HMMTigr db_id=TIGR00435 from=3 to=500 evalue=1.1e-95 interpro_id=IPR002308 interpro_description=Cysteinyl-tRNA synthetase, class Ia GO=Molecular Function: cysteine-tRNA ligase activity (GO:0004817), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: cysteinyl-tRNA aminoacylation (GO:0006423))
tRNA-synt_1e (db=HMMPfam db_id=PF01406 from=32 to=339 evalue=2.8e-69 interpro_id=IPR015803 interpro_description=Cysteinyl-tRNA synthetase, class Ia, N-terminal GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: cysteine-tRNA ligase activity (GO:0004817), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: cysteinyl-tRNA aminoacylation (GO:0006423))
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ACD80_14_12
unknown
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Not on your lists |
11993..12658
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Histidinol phosphatase and related hydrolases of the PHP family n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LR05_9FIRM (db=UNIREF evalue=1.0e-10 bit_score=70.1 identity=30.05 coverage=88.7387387387387)
putative hydrolase; K04477 putative hydrolase (db=KEGG evalue=2.0e-10 bit_score=68.9 identity=29.02 coverage=94.1441441441441)
PHP domain-like (db=superfamily db_id=SSF89550 from=7 to=220 evalue=2.0e-25 interpro_id=IPR016195 interpro_description=Polymerase/histidinol phosphatase-like GO=Molecular Function: catalytic activity (GO:0003824))
no description (db=Gene3D db_id=G3DSA:3.20.20.140 from=6 to=220 evalue=7.1e-25)
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Could be histidinol-phosphatase (EC 3.1.3.15
Jill Banfield
(11/16/12)
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ACD80_14_13
unknown
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Not on your lists |
12672..13904
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Putative uncharacterized protein n=2 Tax=uncultured archaeon RepID=D1J9U0_9ARCH (db=UNIREF evalue=1.0e-93 bit_score=347.0 identity=50.0 coverage=94.8905109489051)
major facilitator superfamily protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=374 to=396)
transmembrane_regions (db=TMHMM db_id=tmhmm from=259 to=281)
|
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ACD80_14_14
ACD80, SR1, Bacteria
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Not on your lists |
13935..14255
|
seg (db=Seg db_id=seg from=86 to=105)
no description (db=Gene3D db_id=G3DSA:3.40.30.10 from=1 to=76 evalue=4.6e-11 interpro_id=IPR012335 interpro_description=Thioredoxin fold)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=1 to=76 evalue=3.9e-10 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
ArsD (db=HMMPfam db_id=PF06953 from=40 to=105 evalue=0.0001 interpro_id=IPR010712 interpro_description=Arsenical resistance operon trans-acting repressor ArsD GO=Molecular Function: DNA binding (GO:0003677), Biological Process: negative regulation of transcription (GO:0016481), Molecular Function: transcription repressor activity (GO:0016564), Biological Process: response to arsenic (GO:0046685))
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ACD80_14_15
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(14365..15939)
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hypothetical protein
hypothetical protein
Methionyl-tRNA synthetase n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PEW0_CLOTS (db=UNIREF evalue=1.0e-92 bit_score=344.0 identity=41.15 coverage=89.7142857142857)
tRNA-synt_1g (db=HMMPfam db_id=PF09334 from=4 to=357 evalue=3.3e-94 interpro_id=IPR015413 interpro_description=Aminoacyl-tRNA synthetase, class I (M) GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
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ACD80_14_16
ACD80, SR1, Bacteria
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Not on your lists |
16108..17358
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MTERF : mitochondrial transcription termination factor.
Jill Banfield
(11/16/12)
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ACD80_14_17
ACD80, SR1, Bacteria
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Not on your lists |
comp(17360..17998)
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ubiquinone/menaquinone biosynthesis methyltransferase ubie
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=17 to=186 evalue=7.0e-33)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=17 to=190 evalue=2.1e-25)
Methyltransf_11 (db=HMMPfam db_id=PF08241 from=53 to=150 evalue=1.3e-21 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
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ACD80_14_18
ACD80, SR1, Bacteria
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Not on your lists |
comp(18074..18382)
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Uncharacterized protein involved in tolerance to divalent cations
GlnB-like (db=superfamily db_id=SSF54913 from=3 to=101 evalue=2.0e-25 interpro_id=IPR011322 interpro_description=Nitrogen regulatory PII-like, alpha/beta)
no description (db=Gene3D db_id=G3DSA:3.30.70.830 from=3 to=101 evalue=1.4e-22 interpro_id=IPR004323 interpro_description=Divalent ion tolerance protein, CutA1 GO=Biological Process: response to metal ion (GO:0010038))
CutA1 (db=HMMPfam db_id=PF03091 from=4 to=100 evalue=2.4e-22 interpro_id=IPR004323 interpro_description=Divalent ion tolerance protein, CutA1 GO=Biological Process: response to metal ion (GO:0010038))
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ACD80_14_19
ACD80, SR1, Bacteria
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Not on your lists |
comp(18398..18799)
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coiled-coil (db=Coil db_id=coil from=23 to=72 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=24)
coiled-coil 23..72 Tax=ACD80
hypothetical protein
|
|
ACD80_14_20
ACD80, SR1, Bacteria
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Not on your lists |
comp(18930..19211)
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DNA-binding protein HU
DNA-binding protein HU n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0W3_9FIRM (db=UNIREF evalue=2.0e-15 bit_score=84.7 identity=48.91 coverage=96.8085106382979)
HISTONE_LIKE (db=PatternScan db_id=PS00045 from=46 to=65 evalue=0.0 interpro_id=IPR020816 interpro_description=Histone-like DNA-binding protein, conserved site GO=Molecular Function: DNA binding (GO:0003677))
Bac_DNA_binding (db=HMMPfam db_id=PF00216 from=1 to=91 evalue=1.5e-28 interpro_id=IPR000119 interpro_description=Histone-like bacterial DNA-binding protein GO=Molecular Function: DNA binding (GO:0003677))
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ACD80_14_21
unknown
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Not on your lists |
comp(19549..20121)
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Sigma-70 region 2
RNA polymerase sigma factor RpoE n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LK32_9FIRM (db=UNIREF evalue=1.0e-10 bit_score=69.3 identity=28.0 coverage=82.7225130890052)
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=21 to=186 evalue=5.2e-30 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=98 to=186 evalue=1.5e-14 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
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ACD80_14_22
ACD80, SR1, Bacteria
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Not on your lists |
comp(20167..20496)
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seg (db=Seg db_id=seg from=39 to=55)
2FE2S_FER_1 (db=PatternScan db_id=PS00197 from=41 to=49 evalue=0.0 interpro_id=IPR006058 interpro_description=2Fe-2S ferredoxin, iron-sulphur binding site GO=Molecular Function: electron carrier activity (GO:0009055))
2Fe-2S ferredoxin-like (db=superfamily db_id=SSF54292 from=1 to=55 evalue=5.2e-10 interpro_id=IPR001041 interpro_description=Ferredoxin GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
Fer2 (db=HMMPfam db_id=PF00111 from=16 to=55 evalue=4.0e-09 interpro_id=IPR001041 interpro_description=Ferredoxin GO=Molecular Function: electron carrier activity (GO:0009055), Molecular Function: iron-sulfur cluster binding (GO:0051536))
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ACD80_14_23
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(20524..21804)
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Peptidase S41A
Carboxyl-terminal protease n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSZ8_9FIRM (db=UNIREF evalue=6.0e-49 bit_score=198.0 identity=35.78 coverage=76.5807962529274)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
prc: C-terminal processing peptidase (db=HMMTigr db_id=TIGR00225 from=78 to=421 evalue=5.0e-69 interpro_id=IPR004447 interpro_description=Peptidase S41A, C-terminal peptidase GO=Biological Process: proteolysis (GO:0006508), Molecular Function: serine-type peptidase activity (GO:0008236))
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ACD80_14_24
ACD80, SR1, Bacteria
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Not on your lists |
comp(21849..22211)
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hypothetical protein
Ribosomal_S23p (db=HMMPfam db_id=PF05635 from=4 to=112 evalue=4.1e-35 interpro_id=IPR008815 interpro_description=23S rRNA-associated protein)
hypothetical protein alias=ACD80_C00014G00024,ACD80_5044.33366.19G0024,ACD80_5044.33366.19_24 id=132188 tax=ACD80 species=Chryseobacterium gleum genus=Chryseobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes organism_group=SR1
hypothetical protein Tax=ACD80
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ACD80_14_25
ACD80, SR1, Bacteria
|
Not on your lists |
comp(22252..22599)
|
seg (db=Seg db_id=seg from=6 to=15)
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=11 to=110 evalue=6.2e-13 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like GO=Molecular Function: DNA binding (GO:0003677))
UPF0102 (db=HMMPfam db_id=PF02021 from=13 to=100 evalue=4.0e-10 interpro_id=IPR003509 interpro_description=Uncharacterised protein family UPF0102)
seg 6..15 Tax=ACD80
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ACD80_14_26
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(22675..23256)
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Fe-Mn family superoxide dismutase (EC:1.15.1.1)
SUPEROXIDE DISMUTASE 2 (db=HMMPanther db_id=PTHR11404 from=3 to=192 evalue=2.3e-68 interpro_id=IPR001189 interpro_description=Manganese/iron superoxide dismutase GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
SUPEROXIDE DISMUTASE [FE] (db=HMMPanther db_id=PTHR11404:SF8 from=3 to=192 evalue=2.3e-68)
Superoxide dismutase, Mn/Fe specific (db=HMMPIR db_id=PIRSF000349 from=1 to=193 evalue=5.3e-65 interpro_id=IPR001189 interpro_description=Manganese/iron superoxide dismutase GO=Molecular Function: superoxide dismutase activity (GO:0004784), Biological Process: superoxide metabolic process (GO:0006801), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
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ACD80_14_27
ACD80, SR1, Bacteria
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Not on your lists |
23415..25280
|
Histone acetyltransferase, ELP3 family
Histone acetyltransferase, ELP3 family
Histone acetyltransferase n=1 Tax=uncultured archaeon GZfos17F1 RepID=Q64DS7_9ARCH (db=UNIREF evalue=7.0e-86 bit_score=322.0 identity=34.27 coverage=82.3151125401929)
HISTONE ACETYLTRANSFERASE-RELATED (db=HMMPanther db_id=PTHR11135 from=80 to=619 evalue=1.1e-101)
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ACD80_14_28
ACD80, SR1, Bacteria
|
Not on your lists |
comp(25341..25760)
|
25341..25760 - (rbs_motif=TTTATT rbs_spacer=13bp)
hypothetical protein Tax=ACD80
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ACD80_14_29
ACD80, SR1, Bacteria
|
Not on your lists |
comp(25794..26231)
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seg (db=Seg db_id=seg from=23 to=46)
seg 23..46 Tax=ACD80
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ACD80_14_30
ACD80, SR1, Bacteria
|
Not on your lists |
comp(26264..26761)
|
26264..26761 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD80
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