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ACD80_15

Alias: ACD80_19255.36002.20

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Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD80_15_1
ACD80, SR1, Bacteria

Not on your lists

247..1599
DNA (1353bp) protein (451aa)
seg (db=Seg db_id=seg from=247 to=328)
seg (db=Seg db_id=seg from=4 to=45)
transmembrane_regions (db=TMHMM db_id=tmhmm from=37 to=59)
Cysteine proteinases (db=superfamily db_id=SSF54001 from=112 to=234 evalue=1.2e-07)
ACD80_15_2
ACD80, SR1, Bacteria

Not on your lists

1735..2136
DNA (402bp) protein (134aa)
coiled-coil (db=Coil db_id=coil from=4 to=36 evalue=NA)
coiled-coil 4..36 Tax=ACD80
ACD80_15_3
unknown

Not on your lists

comp(2192..2467)
DNA (276bp) protein (92aa)
RelE/StbE family addiction module toxin n=2 Tax=Clostridiales RepID=C2KZ94_9FIRM (db=UNIREF evalue=2.0e-15 bit_score=84.7 identity=41.11 coverage=96.7391304347826)
toxin-antitoxin system, toxin component, RelE family
RelE-like (db=superfamily db_id=SSF143011 from=1 to=90 evalue=1.7e-20)
RelE_StbE: addiction module toxin, RelE/Stb (db=HMMTigr db_id=TIGR02385 from=3 to=90 evalue=1.6e-17 interpro_id=IPR012753 interpro_description=Addiction module toxin, RelE/StbE)
ACD80_15_4
ACD80, SR1, Bacteria

Not on your lists

comp(2477..2725)
DNA (249bp) protein (83aa)
PhdYeFM (db=HMMPfam db_id=PF02604 from=5 to=50 evalue=1.1e-07 interpro_id=IPR006442 interpro_description=Prevent-host-death protein)
phd_fam: prevent-host-death family protein (db=HMMTigr db_id=TIGR01552 from=6 to=55 evalue=0.016 interpro_id=IPR006442 interpro_description=Prevent-host-death protein)
PhdYeFM Tax=ACD80
ACD80_15_5
ACD80, SR1, Bacteria

Not on your lists


comp(2892..3977)
DNA (1086bp) protein (362aa)
hypothetical protein
hypothetical protein
Protein recA n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VT65_9BACI (db=UNIREF evalue=5.0e-94 bit_score=348.0 identity=60.82 coverage=79.8342541436464)
seg (db=Seg db_id=seg from=240 to=251)
ACD80_15_6
ACD80, SR1, Bacteria

Not on your lists


4322..4711
DNA (390bp) protein (130aa)
S23 ribosomal protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6S9_THEAS (db=UNIREF evalue=1.0e-26 bit_score=121.0 identity=48.76 coverage=92.3076923076923)
30S ribosomal protein S23
Ribosomal_S23p (db=HMMPfam db_id=PF05635 from=5 to=111 evalue=2.0e-33 interpro_id=IPR008815 interpro_description=23S rRNA-associated protein)
S23 ribosomal protein Tax=ACD80
ACD80_15_7
ACD80, SR1, Bacteria

Not on your lists

4761..5375
DNA (615bp) protein (205aa)
hypothetical protein
seg (db=Seg db_id=seg from=158 to=173)
seg (db=Seg db_id=seg from=192 to=204)
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=75 to=203 evalue=1.9e-21 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
ACD80_15_8

Not on your lists

comp(5464..6456)
DNA (993bp) protein (331aa)
peptidase M23
coiled-coil (db=Coil db_id=coil from=19 to=40 evalue=NA)
seg (db=Seg db_id=seg from=312 to=322)
seg (db=Seg db_id=seg from=162 to=182)
ACD80_15_9
ACD80, SR1, Bacteria

Not on your lists

comp(6485..11416)
DNA (4932bp) protein (1644aa)
seg (db=Seg db_id=seg from=1593 to=1605)
seg (db=Seg db_id=seg from=667 to=678)
seg (db=Seg db_id=seg from=318 to=339)
seg (db=Seg db_id=seg from=98 to=120)
ACD80_15_10
ACD80, SR1, Bacteria

Not on your lists

comp(11532..12722)
DNA (1191bp) protein (397aa)
putative cysteine desulfurase
seg (db=Seg db_id=seg from=155 to=167)
AA_TRANSFER_CLASS_5 (db=PatternScan db_id=PS00595 from=207 to=226 evalue=0.0 interpro_id=IPR020578 interpro_description=Aminotransferase class-V pyridoxal-phosphate binding site)
Aminotran_5 (db=HMMPfam db_id=PF00266 from=16 to=388 evalue=6.5e-97 interpro_id=IPR000192 interpro_description=Aminotransferase, class V/Cysteine desulfurase GO=Biological Process: metabolic process (GO:0008152))
ACD80_15_11

Not on your lists

comp(12886..13353)
DNA (468bp) protein (156aa)
Cytidine/deoxycytidylate deaminase family protein
CMP/dCMP deaminase zinc-binding n=1 Tax=bacterium Ellin514 RepID=B9XIB8_9BACT (db=UNIREF evalue=1.0e-52 bit_score=207.0 identity=62.58 coverage=98.7179487179487)
CYT_DCMP_DEAMINASES (db=PatternScan db_id=PS00903 from=52 to=89 evalue=0.0 interpro_id=IPR016192 interpro_description=APOBEC/CMP deaminase, zinc-binding GO=Molecular Function: zinc ion binding (GO:0008270), Molecular Function: hydrolase activity (GO:0016787))
CYTIDINE/DEOXYCYTIDYLATE DEAMINASE-RELATED (db=HMMPanther db_id=PTHR11079:SF9 from=1 to=152 evalue=1.3e-47)
cytosine deaminase: EC 3.5.4.5 or EC:3.5.4.1 Jill Banfield (11/16/12)
probably EC:3.5.4.1 Jill Banfield (11/16/12)
ACD80_15_12
ACD80, SR1, Bacteria

Not on your lists

comp(13471..14316)
DNA (846bp) protein (282aa)
seg (db=Seg db_id=seg from=249 to=262)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=55)
transmembrane_regions 33..55 Tax=ACD80
hypothetical protein
ACD80_15_13
ACD80, SR1, Bacteria

Not on your lists

comp(14417..14908)
DNA (492bp) protein (164aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
seg (db=Seg db_id=seg from=123 to=133)
transmembrane_regions (db=TMHMM db_id=tmhmm from=77 to=99)
ACD80_15_14
unknown

Not on your lists

15214..15972
DNA (759bp) protein (253aa)
Ribosomal RNA small subunit methyltransferase E
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYS1_9BACL (db=UNIREF evalue=3.0e-16 bit_score=89.0 identity=29.33 coverage=83.7944664031621)
seg (db=Seg db_id=seg from=13 to=20)
Methyltrans_RNA (db=HMMPfam db_id=PF04452 from=26 to=237 evalue=1.1e-32 interpro_id=IPR006700 interpro_description=Ribosomal RNA small subunit methyltransferase E GO=Biological Process: rRNA processing (GO:0006364), Molecular Function: methyltransferase activity (GO:0008168))
ACD80_15_15

Not on your lists

16124..17437
DNA (1314bp) protein (438aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2,6-diaminopimelate ligase
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LL49_9FIRM (db=UNIREF evalue=4.0e-65 bit_score=252.0 identity=39.28 coverage=92.4657534246575)
seg (db=Seg db_id=seg from=51 to=63)
FOLYLPOLYGLU_SYNT_1 (db=PatternScan db_id=PS01011 from=50 to=74 evalue=0.0 interpro_id=IPR018109 interpro_description=Folylpolyglutamate synthetase, conserved site GO=Molecular Function: tetrahydrofolylpolyglutamate synthase activity (GO:0004326), Molecular Function: ATP binding (GO:0005524), Biological Process: folic acid and derivative biosynthetic process (GO:0009396))
ACD80_15_16
ACD80, SR1, Bacteria

Not on your lists

17574..18314
DNA (741bp) protein (247aa)
hypothetical cytosolic protein (db=KEGG evalue=1.0e-07 bit_score=60.5 identity=26.9 coverage=64.7773279352227)
DUF58 (db=HMMPfam db_id=PF01882 from=31 to=111 evalue=4.5e-11 interpro_id=IPR002881 interpro_description=Protein of unknown function DUF58)
hypothetical cytosolic protein Tax=ACD80
ACD80_15_17
ACD80, SR1, Bacteria

Not on your lists

18387..18791
DNA (405bp) protein (135aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=109 to=131)
seg (db=Seg db_id=seg from=85 to=98)
transmembrane_regions 109..131 Tax=ACD80
ACD80_15_18
ACD80, SR1, Bacteria

Not on your lists

comp(18896..19531)
DNA (636bp) protein (212aa)
seg (db=Seg db_id=seg from=97 to=107)
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=10 to=198 evalue=6.1e-06 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=ProfileScan db_id=PS51462 from=39 to=198 evalue=9.537)
seg 97..107 Tax=ACD80
NUDIX (iprscan) Jill Banfield (11/16/12)
ACD80_15_19
ACD80, SR1, Bacteria

Not on your lists

comp(19618..20085)
DNA (468bp) protein (156aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
seg (db=Seg db_id=seg from=141 to=152)
UPF0081 (db=HMMPfam db_id=PF03652 from=10 to=133 evalue=4.9e-13 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=8 to=137 evalue=9.5e-13 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
Swiss-Model found 1zhxA: apparently a holiday junction resolvase Jill Banfield (11/16/12)
ACD80_15_20
ACD80, SR1, Bacteria

Not on your lists

comp(20189..20791)
DNA (603bp) protein (201aa)
seg (db=Seg db_id=seg from=63 to=73)
seg 63..73 Tax=ACD80
hypothetical protein
ACD80_15_21
ACD80, SR1, Bacteria

Not on your lists

21035..23533
DNA (2499bp) protein (833aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=569 to=587)
seg (db=Seg db_id=seg from=2 to=18)
seg (db=Seg db_id=seg from=43 to=54)
seg (db=Seg db_id=seg from=64 to=83)
9 transmembrane regions Jill Banfield (11/16/12)
ACD80_15_22
ACD80, SR1, Bacteria

Not on your lists

23555..25483
DNA (1929bp) protein (643aa)
seg (db=Seg db_id=seg from=16 to=30)
seg (db=Seg db_id=seg from=268 to=279)
seg (db=Seg db_id=seg from=361 to=372)
seg (db=Seg db_id=seg from=404 to=419)
7 transmembrane regions Jill Banfield (11/16/12)
ACD80_15_23
ACD80, SR1, Bacteria

Not on your lists

25665..26516
DNA (852bp) protein (284aa)
seg (db=Seg db_id=seg from=88 to=96)
seg 88..96 Tax=ACD80
hypothetical protein
ACD80_15_24
ACD80, SR1, Bacteria

Not on your lists

26676..27005
DNA (330bp) protein (110aa)
seg (db=Seg db_id=seg from=80 to=93)
seg (db=Seg db_id=seg from=47 to=62)
seg (db=Seg db_id=seg from=30 to=44)
coiled-coil (db=Coil db_id=coil from=34 to=69 evalue=NA)
ACD80_15_25
ACD80, SR1, Bacteria

Not on your lists

27141..27806
DNA (666bp) protein (222aa)
UDG (db=HMMPfam db_id=PF03167 from=68 to=203 evalue=2.5e-08 interpro_id=IPR005122 interpro_description=Uracil-DNA glycosylase-like)
Uracil-DNA glycosylase-like (db=superfamily db_id=SSF52141 from=107 to=197 evalue=7.8e-06 interpro_id=IPR005122 interpro_description=Uracil-DNA glycosylase-like)
UDG Tax=ACD80
phage SPO1 DNA polymerase-related protein
ACD80_15_26
ACD80, SR1, Bacteria

Not on your lists

27869..30931
DNA (3063bp) protein (1021aa)
hypothetical protein
hypothetical protein
UvrABC system protein A n=1 Tax=Aquifex aeolicus RepID=UVRA_AQUAE (db=UNIREF evalue=2.0e-170 bit_score=603.0 identity=36.69 coverage=86.2879529872674)
seg (db=Seg db_id=seg from=682 to=687)
ACD80_15_27
unknown

Not on your lists

31126..32229
DNA (1104bp) protein (368aa)
hypothetical protein
Uncharacterized protein conserved in bacteria n=1 Tax=Eubacterium cylindroides T2-87 RepID=D4JG97_9FIRM (db=UNIREF evalue=7.0e-76 bit_score=287.0 identity=45.24 coverage=88.8586956521739)
seg (db=Seg db_id=seg from=349 to=361)
DUF1846 (db=HMMPfam db_id=PF08903 from=12 to=346 evalue=3.4e-104 interpro_id=IPR014999 interpro_description=Uncharacterised protein family UPF0371)
ACD80_15_28
ACD80, SR1, Bacteria

Not on your lists

32399..32710
DNA (312bp) protein (104aa)
32399..32710 + (rbs_motif=TTTA rbs_spacer=13bp)
hypothetical protein Tax=ACD80
ACD80_15_29
unknown

Not on your lists

comp(32822..33523)
DNA (702bp) protein (234aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KRY8_9BACT (db=UNIREF evalue=2.0e-18 bit_score=96.3 identity=28.57 coverage=88.034188034188)
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KRY8_9BACT Tax=ACD80
ACD80_15_30
ACD80, SR1, Bacteria

Not on your lists

comp(33547..34086)
DNA (540bp) protein (180aa)
seg (db=Seg db_id=seg from=5 to=19)
transmembrane_regions (db=TMHMM db_id=tmhmm from=149 to=171)
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=136)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
Displaying items 1-30 of 32 in total

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