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ACD80_25

Alias: ACD80_13538.13469.19

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD80_25_1
ACD80, SR1, Bacteria

Not on your lists

comp(3..4478)
DNA (4476bp) protein (1492aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=40)
seg (db=Seg db_id=seg from=45 to=55)
seg (db=Seg db_id=seg from=301 to=310)
seg (db=Seg db_id=seg from=1077 to=1088)
ACD80_25_2
ACD80, SR1, Bacteria

Not on your lists

comp(4667..7399)
DNA (2733bp) protein (911aa)
seg (db=Seg db_id=seg from=543 to=555)
seg (db=Seg db_id=seg from=451 to=466)
transmembrane_regions (db=TMHMM db_id=tmhmm from=19 to=41)
FN3 (db=ProfileScan db_id=PS50853 from=453 to=555 evalue=10.23 interpro_id=IPR003961 interpro_description=Fibronectin, type III)
ACD80_25_3
ACD80, SR1, Bacteria

Not on your lists

comp(7527..7769)
DNA (243bp) protein (81aa)
7527..7769 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD80
ACD80_25_4

Not on your lists

comp(7781..9136)
DNA (1356bp) protein (452aa)
hypothetical protein
seg (db=Seg db_id=seg from=427 to=439)
hypothetical protein alias=ACD80_13538.13469.19G0004,ACD80_13538.13469.19_4,ACD80_C00025G00004 id=132374 tax=ACD80 species=unknown genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=SR1
Uncharacterized protein {ECO:0000313|EMBL:EKD25459.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
ACD80_25_5
unknown

Not on your lists

9300..10697
DNA (1398bp) protein (466aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=3 Tax=Eubacterium siraeum RepID=D4JSG9_9FIRM (db=UNIREF evalue=4.0e-54 bit_score=216.0 identity=30.8 coverage=90.7725321888412)
UDP-N-acetylmuramoylalanine--D-glutamate ligase
UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (db=HMMPanther db_id=PTHR23135:SF2 from=126 to=463 evalue=3.6e-46)
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=126 to=463 evalue=3.6e-46)
ACD80_25_6
ACD80, SR1, Bacteria

Not on your lists

10724..11398
DNA (675bp) protein (225aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=186 to=208)
seg (db=Seg db_id=seg from=194 to=205)
hypothetical protein alias=ACD80_13538.13469.19G0006,ACD80_13538.13469.19_6,ACD80_C00025G00006 id=132375 tax=ACD80 species=Methanothermobacter thermautotrophicus genus=Methanothermobacter taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota organism_group=SR1
ACD80_25_7
ACD80, SR1, Bacteria

Not on your lists

11447..11992
DNA (546bp) protein (182aa)
seg (db=Seg db_id=seg from=59 to=70)
seg (db=Seg db_id=seg from=77 to=91)
seg 59..70 Tax=ACD80
ACD80_25_8
ACD80, SR1, Bacteria

Not on your lists

12099..12605
DNA (507bp) protein (169aa)
isochorismatase hydrolase
Isochorismatase-like hydrolases (db=superfamily db_id=SSF52499 from=1 to=154 evalue=3.8e-35 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
no description (db=Gene3D db_id=G3DSA:3.40.50.850 from=2 to=153 evalue=4.9e-33 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
Isochorismatase (db=HMMPfam db_id=PF00857 from=4 to=152 evalue=2.5e-29 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD80_25_9
ACD80, SR1, Bacteria

Not on your lists

12701..12904
DNA (204bp) protein (68aa)
12701..12904 + (rbs_motif=TTAT rbs_spacer=11bp)
hypothetical protein Tax=ACD80
ACD80_25_10
ACD80, SR1, Bacteria

Not on your lists

13152..13427
DNA (276bp) protein (92aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=58)
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=90)
seg (db=Seg db_id=seg from=22 to=35)
Displaying 10 items

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