Alias: ACD80_3555.12322.17
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD80_51_1
ACD80, SR1, Bacteria
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Not on your lists |
comp(40..288)
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GIY-YIG (db=HMMPfam db_id=PF01541 from=1 to=65 evalue=1.2e-10 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=1 to=65 evalue=8.3e-07 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG 1..65 Tax=ACD80
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ACD80_51_2
ACD80, SR1, Bacteria
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Not on your lists |
669..983
|
seg (db=Seg db_id=seg from=12 to=44)
seg (db=Seg db_id=seg from=50 to=59)
seg (db=Seg db_id=seg from=81 to=104)
seg 12..44 Tax=ACD80
|
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ACD80_51_3
unknown
|
Not on your lists |
1035..1949
|
Replication protein n=1 Tax=Pseudomonas putida RepID=Q9K4S9_PSEPU (db=UNIREF evalue=2.0e-19 bit_score=100.0 identity=32.56 coverage=76.0655737704918)
putative replication protein (db=KEGG evalue=5.0e-15 bit_score=85.5 identity=29.05 coverage=74.0983606557377)
Rep_1 (db=HMMPfam db_id=PF01446 from=102 to=281 evalue=2.8e-18 interpro_id=IPR000989 interpro_description=Replication protein GO=Molecular Function: DNA binding (GO:0003677), Cellular Component: extrachromosomal circular DNA (GO:0005727), Biological Process: DNA replication (GO:0006260))
Replication protein n=1 Tax=Pseudomonas putida RepID=Q9K4S9_PSEPU Tax=ACD80
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ACD80_51_4
ACD80, SR1, Bacteria
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Not on your lists |
comp(1972..3918)
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hypothetical protein
hypothetical protein
Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R503_9CHLA (db=UNIREF evalue=2.0e-159 bit_score=566.0 identity=46.21 coverage=87.0570107858243)
transmembrane_regions (db=TMHMM db_id=tmhmm from=579 to=601)
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ACD80_51_5
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
comp(3939..5111)
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Cytochrome c biogenesis protein
seg (db=Seg db_id=seg from=370 to=387)
seg (db=Seg db_id=seg from=239 to=253)
seg (db=Seg db_id=seg from=145 to=157)
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ACD80_51_6
ACD80, SR1, Bacteria
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Not on your lists |
comp(5154..6032)
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Sodium/proton antiporter
seg (db=Seg db_id=seg from=7 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=103 to=289 evalue=3.7e-24 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
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Has CxxCK found in nitrate reductase
Jill Banfield
(11/16/12)
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ACD80_51_7
ACD80, SR1, Bacteria
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Not on your lists |
comp(6103..6510)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions 7..29 Tax=ACD80
hypothetical protein
|
C and H rich
Jill Banfield
(11/16/12)
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ACD80_51_8
ACD80, SR1, Bacteria
|
Not on your lists |
6657..7862
|
6657..7862 + (rbs_motif=TTTATT rbs_spacer=13bp)
hypothetical protein Tax=ACD80
|
|
ACD80_51_9
unknown
|
Not on your lists |
8302..10110
|
hypothetical protein
Resolvase-like protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9DFP4_9RHIZ (db=UNIREF evalue=6.0e-47 bit_score=192.0 identity=28.55 coverage=87.0646766169154)
coiled-coil (db=Coil db_id=coil from=454 to=475 evalue=NA)
RECOMBINASES_1 (db=PatternScan db_id=PS00397 from=43 to=51 evalue=0.0 interpro_id=IPR006118 interpro_description=Recombinase, conserved site GO=Molecular Function: recombinase activity (GO:0000150), Biological Process: DNA recombination (GO:0006310))
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ACD80_51_10
ACD80, SR1, Bacteria
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Not on your lists |
comp(10403..10591)
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Ribosomal_L28 (db=HMMPfam db_id=PF00830 from=3 to=58 evalue=7.0e-15 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L28p-like (db=superfamily db_id=SSF143800 from=1 to=59 evalue=9.6e-13)
L28: ribosomal protein L28 (db=HMMTigr db_id=TIGR00009 from=1 to=57 evalue=9.2e-11 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L28 (db=HAMAP db_id=MF_00373 from=1 to=61 evalue=15.179 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD80_51_11
unknown
|
Not on your lists |
comp(10638..11309)
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hypothetical protein
50S ribosomal protein L25 n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTC0_9BACT (db=UNIREF evalue=3.0e-18 bit_score=95.5 identity=37.87 coverage=74.1071428571429)
seg (db=Seg db_id=seg from=62 to=76)
seg (db=Seg db_id=seg from=180 to=223)
|
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ACD80_51_12
unknown
|
Not on your lists |
comp(11487..11912)
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hypothetical protein
50S ribosomal protein L19 n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZUU0_9BACT (db=UNIREF evalue=2.0e-13 bit_score=78.2 identity=40.95 coverage=71.830985915493)
seg (db=Seg db_id=seg from=125 to=141)
Ribosomal_L19 (db=HMMPfam db_id=PF01245 from=15 to=112 evalue=1.2e-22 interpro_id=IPR001857 interpro_description=Ribosomal protein L19 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD80_51_13
ACD80, SR1, Bacteria
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Not on your lists |
comp(11943..12086)
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seg (db=Seg db_id=seg from=35 to=47)
seg 35..47 Tax=ACD80
hypothetical protein
|
|
ACD80_51_14
ACD80, SR1, Bacteria
|
Not on your lists |
comp(12111..12359)
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12111..12359 - (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD80
hypothetical protein
|