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ACD8_36

Alias: ACD8_15544.30867.19

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD8_36_1

Not on your lists

comp(3..1238)
DNA (1236bp) protein (412aa)
DNA-directed RNA polymerase, beta' subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8D0B7_HALOH (db=UNIREF evalue=1.0e-131 bit_score=473.0 identity=54.61 coverage=98.7864077669903)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-DIRECTED RNA POLYMERASE BETA CHAIN (db=HMMPanther db_id=PTHR19376:SF4 from=1 to=411 evalue=1.3e-187)
ACD8_36_2

Not on your lists

comp(2036..2161)
DNA (126bp) protein (42aa)
2036..2161 - (rbs_motif=TAGAA rbs_spacer=9bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE20253.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD8_36_3

Not on your lists

comp(2403..5747)
DNA (3345bp) protein (1115aa)
DNA-directed RNA polymerase subunit beta n=2 Tax=Roseiflexus RepID=RPOB_ROSS1 (db=UNIREF evalue=0.0 bit_score=1290.0 identity=54.73 coverage=98.9237668161435)
DNA-directed RNA polymerase subunit beta
DNA-directed RNA polymerase subunit beta
beta and beta-prime subunits of DNA dependent RNA-polymerase (db=superfamily db_id=SSF64484 from=4 to=1095 evalue=0.0)
ACD8_36_4

Not on your lists

6289..7125
DNA (837bp) protein (279aa)
6289..7125 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE20252.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD8_36_5

Not on your lists

comp(7300..7575)
DNA (276bp) protein (92aa)
seg (db=Seg db_id=seg from=8 to=26)
seg (db=Seg db_id=seg from=61 to=82)
seg (db=Seg db_id=seg from=83 to=91)
transmembrane_regions (db=TMHMM db_id=tmhmm from=62 to=81)
ACD8_36_6

Not on your lists

comp(7657..8310)
DNA (654bp) protein (218aa)
coiled-coil (db=Coil db_id=coil from=2 to=23 evalue=NA)
Uncharacterized protein {ECO:0000313|EMBL:EKE20250.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD8_36_7

Not on your lists

comp(8382..8675)
DNA (294bp) protein (98aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=65)
transmembrane_regions (db=TMHMM db_id=tmhmm from=75 to=94)
Uncharacterized protein {ECO:0000313|EMBL:EKE20251.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD8_36_8

Not on your lists

comp(8913..9182)
DNA (270bp) protein (90aa)
8913..9182 - (rbs_motif=TAAA rbs_spacer=3bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE20237.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD8_36_9

Not on your lists

comp(9187..9975)
DNA (789bp) protein (263aa)
N-acetylmuramyl-L-alanine amidase, negative regulator of ampc, ampd
seg (db=Seg db_id=seg from=5 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
N-acetylmuramoyl-L-alanine amidase-like (db=superfamily db_id=SSF55846 from=108 to=260 evalue=5.9e-35 interpro_id=IPR002502 interpro_description=N-acetylmuramoyl-L-alanine amidase, family 2 GO=Molecular Function: N-acetylmuramoyl-L-alanine amidase activity (GO:0008745), Biological Process: peptidoglycan catabolic process (GO:0009253))
ACD8_36_10

Not on your lists

comp(10324..12501)
DNA (2178bp) protein (726aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=592 to=595)
beta-lactamase/transpeptidase-like (db=superfamily db_id=SSF56601 from=226 to=633 evalue=2.8e-95 interpro_id=IPR012338 interpro_description=Beta-lactamase-type transpeptidase fold)
ACD8_36_11

Not on your lists

comp(12623..13861)
DNA (1239bp) protein (413aa)
glutamate dehydrogenase
glutamate dehydrogenase
Glutamate dehydrogenase n=2 Tax=Thermoplasma RepID=Q97AN9_THEVO (db=UNIREF evalue=3.0e-112 bit_score=408.0 identity=51.71 coverage=98.547215496368)
seg (db=Seg db_id=seg from=199 to=209)
ACD8_36_12

Not on your lists

comp(14302..14649)
DNA (348bp) protein (116aa)
14302..14649 - (rbs_motif=AAAA rbs_spacer=6bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE20241.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD8_36_13

Not on your lists

comp(14771..15520)
DNA (750bp) protein (250aa)
PRTase-like (db=superfamily db_id=SSF53271 from=55 to=167 evalue=3.5e-06)
Uncharacterized protein {ECO:0000313|EMBL:EKE20242.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD8_36_14

Not on your lists

comp(15565..16566)
DNA (1002bp) protein (334aa)
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
pyrF_sub2: orotidine 5'-phosphate decarboxy (db=HMMTigr db_id=TIGR02127 from=10 to=298 evalue=1.9e-71 interpro_id=IPR011995 interpro_description=Orotidine 5'-phosphate decarboxylase, subfamily 2, core GO=Molecular Function: orotidine-5'-phosphate decarboxylase activity (GO:0004590), Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221))
Ribulose-phoshate binding barrel (db=superfamily db_id=SSF51366 from=9 to=323 evalue=5.0e-60 interpro_id=IPR011060 interpro_description=Ribulose-phosphate binding barrel GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
OMPdecase (db=HMMPfam db_id=PF00215 from=23 to=263 evalue=6.3e-14 interpro_id=IPR001754 interpro_description=Orotidine 5'-phosphate decarboxylase, core GO=Molecular Function: orotidine-5'-phosphate decarboxylase activity (GO:0004590), Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207))
ACD8_36_15

Not on your lists

comp(16733..17323)
DNA (591bp) protein (197aa)
hypothetical protein
Isochorismatase hydrolase n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HT27_9RHOB (db=UNIREF evalue=5.0e-27 bit_score=124.0 identity=35.03 coverage=94.4162436548223)
Isochorismatase-like hydrolases (db=superfamily db_id=SSF52499 from=1 to=195 evalue=9.2e-53 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
no description (db=Gene3D db_id=G3DSA:3.40.50.850 from=10 to=195 evalue=3.2e-52 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
ACD8_36_16

Not on your lists

comp(17337..19400)
DNA (2064bp) protein (688aa)
asparagine synthase
seg (db=Seg db_id=seg from=31 to=41)
coiled-coil (db=Coil db_id=coil from=341 to=362 evalue=NA)
ASPARAGINE SYNTHETASE (db=HMMPanther db_id=PTHR11772 from=110 to=593 evalue=1.2e-66)
ACD8_36_17

Not on your lists

comp(19504..19995)
DNA (492bp) protein (164aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FAW8_9RHOB (db=UNIREF evalue=2.0e-36 bit_score=154.0 identity=68.22 coverage=64.0243902439024)
Peptidylprolyl isomerase (EC:5.2.1.8)
seg (db=Seg db_id=seg from=9 to=24)
seg (db=Seg db_id=seg from=27 to=54)
ACD8_36_18

Not on your lists

comp(20070..20591)
DNA (522bp) protein (174aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
transmembrane_regions (db=TMHMM db_id=tmhmm from=91 to=113)
transmembrane_regions (db=TMHMM db_id=tmhmm from=120 to=137)
transmembrane_regions (db=TMHMM db_id=tmhmm from=142 to=164)
ACD8_36_19

Not on your lists

comp(20862..21734)
DNA (873bp) protein (291aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=210 to=232)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
CAP (db=HMMPfam db_id=PF00188 from=38 to=156 evalue=2.3e-17 interpro_id=IPR014044 interpro_description=SCP-like extracellular)
ACD8_36_20

Not on your lists

comp(21888..26243)
DNA (4356bp) protein (1452aa)
hypothetical protein
Putative surface protein n=1 Tax=Kordia algicida OT-1 RepID=A9E0K7_9FLAO (db=UNIREF evalue=6.0e-23 bit_score=114.0 identity=39.27 coverage=14.6005509641873)
seg (db=Seg db_id=seg from=1412 to=1423)
seg (db=Seg db_id=seg from=1251 to=1273)
ACD8_36_21

Not on your lists

comp(26616..27659)
DNA (1044bp) protein (348aa)
hypothetical protein
hypothetical protein
Ribonucleoside-diphosphate reductase, beta subunit n=13 Tax=Fusobacterium RepID=D4CVP7_9FUSO (db=UNIREF evalue=1.0e-106 bit_score=390.0 identity=54.25 coverage=96.8390804597701)
RIBORED_SMALL (db=PatternScan db_id=PS00368 from=122 to=138 evalue=0.0 interpro_id=IPR000358 interpro_description=Ribonucleotide reductase GO=Molecular Function: ribonucleoside-diphosphate reductase activity (GO:0004748), Biological Process: deoxyribonucleoside diphosphate metabolic process (GO:0009186), Biological Process: oxidation reduction (GO:0055114))
ACD8_36_22

Not on your lists

comp(27986..30601)
DNA (2616bp) protein (872aa)
hypothetical protein
hypothetical protein
Ribonucleoside-diphosphate reductase n=1 Tax=Hydrogenobacter thermophilus TK-6 RepID=D3DF89_HYDTT (db=UNIREF evalue=3.0e-170 bit_score=603.0 identity=44.17 coverage=86.4678899082569)
coiled-coil (db=Coil db_id=coil from=93 to=115 evalue=NA)
Displaying 22 items

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