Alias: ACDUNK_2911.20226.18
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD8_51_1
GWC1_OD1_38_22, Parcubacteria, Bacteria
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Not on your lists |
comp(3..1037)
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galactose-1-phosphate uridylyltransferase
seg (db=Seg db_id=seg from=11 to=24)
Galactose-1-phosphate uridylyltransferase (db=HMMPIR db_id=PIRSF000808 from=5 to=345 evalue=1.2e-70 interpro_id=IPR001937 interpro_description=Galactose-1-phosphate uridyl transferase, class I GO=Biological Process: galactose metabolic process (GO:0006012), Molecular Function: UDP-glucose:hexose-1-phosphate uridylyltransferase activity (GO:0008108), Molecular Function: zinc ion binding (GO:0008270))
GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE (db=HMMPanther db_id=PTHR11943 from=17 to=345 evalue=9.6e-55 interpro_id=IPR001937 interpro_description=Galactose-1-phosphate uridyl transferase, class I GO=Biological Process: galactose metabolic process (GO:0006012), Molecular Function: UDP-glucose:hexose-1-phosphate uridylyltransferase activity (GO:0008108), Molecular Function: zinc ion binding (GO:0008270))
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ACD8_51_2
uncultured bacterium, Bacteria
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Not on your lists |
comp(1077..1832)
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glycosyl transferase
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=241 evalue=7.4e-32)
GLYCOSYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR10859 from=13 to=248 evalue=1.9e-30)
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ACD8_51_3
uncultured bacterium, Bacteria
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Not on your lists |
comp(1944..2684)
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glycosyl transferase family protein
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=6 to=219 evalue=2.6e-38)
GLYCOSYLTRANSFERASE RELATED (db=HMMPanther db_id=PTHR10859 from=13 to=245 evalue=1.5e-36)
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ACD8_51_4
uncultured bacterium, Bacteria
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Not on your lists |
comp(2777..3211)
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seg (db=Seg db_id=seg from=56 to=68)
UPF0081 (db=HMMPfam db_id=PF03652 from=15 to=141 evalue=2.0e-25 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
Ribonuclease H-like (db=superfamily db_id=SSF53098 from=12 to=143 evalue=5.7e-20 interpro_id=IPR012337 interpro_description=Polynucleotidyl transferase, ribonuclease H fold GO=Molecular Function: nucleic acid binding (GO:0003676))
no description (db=Gene3D db_id=G3DSA:3.30.420.140 from=12 to=140 evalue=5.9e-18 interpro_id=IPR005227 interpro_description=Resolvase, holliday junction-type, YqgF-like GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310), Biological Process: response to DNA damage stimulus (GO:0006974), Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788))
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ACD8_51_5
GWC1_OD1_38_22, Parcubacteria, Bacteria
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Not on your lists |
comp(3754..4518)
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methionine aminopeptidase, type I (EC:3.4.11.18)
met_pdase_I: methionine aminopeptidase, t (db=HMMTigr db_id=TIGR00500 from=3 to=254 evalue=7.1e-107 interpro_id=IPR002467 interpro_description=Peptidase M24A, methionine aminopeptidase, subfamily 1 GO=Molecular Function: aminopeptidase activity (GO:0004177), Biological Process: proteolysis (GO:0006508), Molecular Function: metalloexopeptidase activity (GO:0008235))
no description (db=Gene3D db_id=G3DSA:3.90.230.10 from=3 to=253 evalue=1.9e-78 interpro_id=IPR000994 interpro_description=Peptidase M24, structural domain GO=Biological Process: cellular process (GO:0009987))
Creatinase/aminopeptidase (db=superfamily db_id=SSF55920 from=2 to=254 evalue=1.0e-74 interpro_id=IPR000994 interpro_description=Peptidase M24, structural domain GO=Biological Process: cellular process (GO:0009987))
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ACD8_51_6
GWC1_OD1_36_108, Parcubacteria, Bacteria
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Not on your lists |
comp(4588..5232)
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adenylate kinase
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=212 evalue=5.1e-55)
NUCLEOTIDE KINASE (db=HMMPanther db_id=PTHR23359 from=1 to=213 evalue=7.4e-52 interpro_id=IPR000850 interpro_description=Adenylate kinase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (GO:0006139), Molecular Function: nucleobase, nucleoside, nucleotide kinase activity (GO:0019205))
ADENYLATE KINASE (db=HMMPanther db_id=PTHR23359:SF22 from=1 to=213 evalue=7.4e-52)
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ACD8_51_7
GWC1_OD1_38_22, Parcubacteria, Bacteria
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Not on your lists |
comp(5342..6613)
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preprotein translocase subunit SecY
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
transmembrane_regions (db=TMHMM db_id=tmhmm from=59 to=81)
transmembrane_regions (db=TMHMM db_id=tmhmm from=116 to=133)
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ACD8_51_8
GWC2_OD1-i_37_82, Moranbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(6748..7227)
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rplO; 50S ribosomal protein L15
seg (db=Seg db_id=seg from=21 to=39)
Ribosomal proteins L15p and L18e (db=superfamily db_id=SSF52080 from=12 to=158 evalue=3.4e-20 interpro_id=IPR021131 interpro_description=Ribosomal protein L18e/L15)
rplO_bact: ribosomal protein L15 (db=HMMTigr db_id=TIGR01071 from=16 to=158 evalue=7.4e-19 interpro_id=IPR005749 interpro_description=Ribosomal protein L15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
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ACD8_51_9
GWC1_OD1_38_22, Parcubacteria, Bacteria
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Not on your lists |
comp(7282..7770)
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rpsE; 30S ribosomal protein S5
seg (db=Seg db_id=seg from=23 to=31)
seg (db=Seg db_id=seg from=99 to=112)
seg (db=Seg db_id=seg from=35 to=55)
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ACD8_51_10
GWD2_OD1_36_198, Moranbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(7718..8359)
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adenylate kinase
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=1 to=213 evalue=5.3e-54)
ADENYLATE KINASE (db=HMMPanther db_id=PTHR23359:SF22 from=1 to=213 evalue=5.8e-50)
NUCLEOTIDE KINASE (db=HMMPanther db_id=PTHR23359 from=1 to=213 evalue=5.8e-50 interpro_id=IPR000850 interpro_description=Adenylate kinase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (GO:0006139), Molecular Function: nucleobase, nucleoside, nucleotide kinase activity (GO:0019205))
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ACD8_51_11
GWD2_OD1_36_198, Moranbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(8459..9730)
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preprotein translocase subunit SecY
transmembrane_regions (db=TMHMM db_id=tmhmm from=305 to=327)
transmembrane_regions (db=TMHMM db_id=tmhmm from=261 to=283)
transmembrane_regions (db=TMHMM db_id=tmhmm from=204 to=226)
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ACD8_51_12
uncultured bacterium, Bacteria
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Not on your lists |
comp(9797..10243)
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rplO; 50S ribosomal protein L15
50S ribosomal protein L15 n=1 Tax=Coprococcus catus GD/7 RepID=D4J754_9FIRM (db=UNIREF evalue=5.0e-13 bit_score=76.6 identity=46.6 coverage=65.7718120805369)
seg (db=Seg db_id=seg from=130 to=143)
seg (db=Seg db_id=seg from=66 to=81)
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removed from phylogenetic list
kelly wrighton
(11/16/12)
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ACD8_51_13
GWC2_OD1_37_73, Moranbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(10245..10775)
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ribosomal protein S5, nonfunctional
seg (db=Seg db_id=seg from=26 to=40)
seg (db=Seg db_id=seg from=46 to=64)
seg (db=Seg db_id=seg from=108 to=121)
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ACD8_51_14
GWC1_OD1_38_22, Parcubacteria, Bacteria
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Not on your lists |
comp(10891..11241)
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rplR; 50S ribosomal protein L18
L18_bact: ribosomal protein L18 (db=HMMTigr db_id=TIGR00060 from=6 to=116 evalue=3.2e-47 interpro_id=IPR004389 interpro_description=Ribosomal protein L18, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Translational machinery components (db=superfamily db_id=SSF53137 from=23 to=116 evalue=1.6e-31)
Ribosomal_L18p (db=HMMPfam db_id=PF00861 from=9 to=116 evalue=1.9e-30 interpro_id=IPR005484 interpro_description=Ribosomal protein L18/L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD8_51_15
GWC1_OD1_38_22, Parcubacteria, Bacteria
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Not on your lists |
comp(11359..11895)
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50S ribosomal protein L6
Ribosomal protein L6 n=1 Tax=Clostridium lentocellum DSM 5427 RepID=D5QXT1_9FIRM (db=UNIREF evalue=4.0e-45 bit_score=183.0 identity=53.07 coverage=98.8826815642458)
L6_bact: ribosomal protein L6 (db=HMMTigr db_id=TIGR03654 from=2 to=175 evalue=1.3e-82 interpro_id=IPR019906 interpro_description=Ribosomal protein L6, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
60S/50S RIBOSOMAL PROTEIN L6/L9 (db=HMMPanther db_id=PTHR11655 from=2 to=178 evalue=9.5e-69 interpro_id=IPR000702 interpro_description=Ribosomal protein L6 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
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ACD8_51_16
GWC1_OD1_38_22, Parcubacteria, Bacteria
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Not on your lists |
comp(11993..12397)
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30S ribosomal protein S8
Ribosomal_S8 (db=HMMPfam db_id=PF00410 from=3 to=134 evalue=1.6e-46 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein S8 (db=superfamily db_id=SSF56047 from=2 to=134 evalue=2.8e-42 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S8 (db=HMMPanther db_id=PTHR11758 from=1 to=134 evalue=1.0e-40 interpro_id=IPR000630 interpro_description=Ribosomal protein S8 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD8_51_17
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(12440..12625)
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Ribosomal protein S14
30S RIBOSOMAL PROTEIN S14 (db=HMMPanther db_id=PTHR19836 from=13 to=61 evalue=1.2e-26 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_S14 (db=HMMPfam db_id=PF00253 from=10 to=60 evalue=7.2e-24 interpro_id=IPR001209 interpro_description=Ribosomal protein S14 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Glucocorticoid receptor-like (DNA-binding domain) (db=superfamily db_id=SSF57716 from=2 to=61 evalue=4.1e-20)
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ACD8_51_18
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(12681..13232)
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50S ribosomal protein L5
RIBOSOMAL_L5 (db=PatternScan db_id=PS00358 from=59 to=75 evalue=0.0 interpro_id=IPR020929 interpro_description=Ribosomal protein L5, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
60S RIBOSOMAL PROTEIN L11-RELATED (db=HMMPanther db_id=PTHR11994 from=7 to=181 evalue=5.1e-76 interpro_id=IPR002132 interpro_description=Ribosomal protein L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L5 (db=HMMPanther db_id=PTHR11994:SF4 from=7 to=181 evalue=5.1e-76)
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ACD8_51_19
GWC1_OD1_36_108, Parcubacteria, Bacteria
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Not on your lists |
comp(13285..13590)
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50S ribosomal protein L24
50S ribosomal protein L24 n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NXE0_9BACE (db=UNIREF evalue=2.0e-23 bit_score=110.0 identity=57.84 coverage=98.0392156862745)
rplX_bact: ribosomal protein L24 (db=HMMTigr db_id=TIGR01079 from=1 to=101 evalue=3.0e-38 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
MITOCHONDRIAL RIBOSOMAL PROTEIN L24 (db=HMMPanther db_id=PTHR12903 from=1 to=101 evalue=1.2e-29 interpro_id=IPR003256 interpro_description=Ribosomal protein L24 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD8_51_20
uncultured bacterium, Bacteria
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Not on your lists |
comp(13612..13977)
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rplN; 50S ribosomal protein L14
seg (db=Seg db_id=seg from=57 to=72)
RIBOSOMAL_L14 (db=PatternScan db_id=PS00049 from=60 to=86 evalue=0.0 interpro_id=IPR019972 interpro_description=Ribosomal protein L14 conserved site)
rplN_bact: ribosomal protein L14 (db=HMMTigr db_id=TIGR01067 from=1 to=121 evalue=3.9e-77 interpro_id=IPR005745 interpro_description=Ribosomal protein L14, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
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ACD8_51_21
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(14017..14259)
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30S ribosomal protein S17
30S ribosomal protein S17 n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTL7_9FIRM (db=UNIREF evalue=2.0e-10 bit_score=68.2 identity=57.89 coverage=69.1358024691358)
seg (db=Seg db_id=seg from=6 to=22)
S17_bact: 30S ribosomal protein S17 (db=HMMTigr db_id=TIGR03635 from=8 to=79 evalue=9.7e-31 interpro_id=IPR019984 interpro_description=Ribosomal protein S17, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD8_51_22
GWD2_OD1_36_198, Moranbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(14286..14480)
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coiled-coil (db=Coil db_id=coil from=11 to=32 evalue=NA)
Ribosomal_L29 (db=HMMPfam db_id=PF00831 from=3 to=60 evalue=2.8e-14 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal protein L29 (L29p) (db=superfamily db_id=SSF46561 from=1 to=60 evalue=3.6e-13 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:1.10.287.310 from=1 to=59 evalue=5.1e-08 interpro_id=IPR001854 interpro_description=Ribosomal protein L29 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD8_51_23
uncultured bacterium, Bacteria
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Not on your lists |
comp(14574..14987)
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50S ribosomal protein L16
50S ribosomal protein L16 n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTL5_9FIRM (db=UNIREF evalue=2.0e-43 bit_score=177.0 identity=61.76 coverage=97.1014492753623)
RIBOSOMAL_L16_1 (db=PatternScan db_id=PS00586 from=60 to=71 evalue=0.0 interpro_id=IPR020798 interpro_description=Ribosomal protein L16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rplP_bact: ribosomal protein L16 (db=HMMTigr db_id=TIGR01164 from=2 to=128 evalue=2.5e-72 interpro_id=IPR000114 interpro_description=Ribosomal protein L16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
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ACD8_51_24
GWD2_OD1_38_11, Parcubacteria, Bacteria
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Not on your lists |
comp(15030..15677)
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30S ribosomal protein S3
seg (db=Seg db_id=seg from=73 to=87)
RIBOSOMAL_S3 (db=PatternScan db_id=PS00548 from=167 to=201 evalue=0.0 interpro_id=IPR018280 interpro_description=Ribosomal protein S3, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
rpsC_bact: ribosomal protein S3 (db=HMMTigr db_id=TIGR01009 from=1 to=215 evalue=7.6e-96 interpro_id=IPR005704 interpro_description=Ribosomal protein S3, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
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ACD8_51_25
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(15740..16309)
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50S ribosomal protein L22 n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PCV7_9FIRM (db=UNIREF evalue=6.0e-23 bit_score=110.0 identity=49.09 coverage=57.3684210526316)
rplV; 50S ribosomal protein L22
coiled-coil (db=Coil db_id=coil from=108 to=158 evalue=NA)
RIBOSOMAL_L22 (db=PatternScan db_id=PS00464 from=83 to=107 evalue=0.0 interpro_id=IPR018260 interpro_description=Ribosomal protein L22/L17, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD8_51_26
GWE2_OD1_36_40, Moranbacteria, Parcubacteria, Bacteria
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Not on your lists |
comp(16334..16675)
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30S ribosomal protein S19
seg (db=Seg db_id=seg from=86 to=113)
coiled-coil (db=Coil db_id=coil from=86 to=107 evalue=NA)
RIBOSOMAL_S19 (db=PatternScan db_id=PS00323 from=51 to=75 evalue=0.0 interpro_id=IPR020934 interpro_description=Ribosomal protein S19 conserved site GO=Molecular Function: RNA binding (GO:0003723))
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ACD8_51_27
GWC1_OD1_36_108, Parcubacteria, Bacteria
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Not on your lists |
comp(16808..17638)
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rplB; ribosomal protein L2
rplB_bact: ribosomal protein L2 (db=HMMTigr db_id=TIGR01171 from=3 to=275 evalue=3.3e-142 interpro_id=IPR005880 interpro_description=Ribosomal protein L2, bacterial-type GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934), Molecular Function: transferase activity (GO:0016740))
Ribosomal protein, L2p/L2a/L8e/organellar L2 types (db=HMMPIR db_id=PIRSF002158 from=3 to=273 evalue=1.4e-96 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L2 (db=HMMPanther db_id=PTHR13691 from=92 to=273 evalue=8.4e-83 interpro_id=IPR002171 interpro_description=Ribosomal protein L2 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD8_51_28
GWC1_OD1_36_108, Parcubacteria, Bacteria
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Not on your lists |
comp(17668..18069)
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50S ribosomal protein L23
seg (db=Seg db_id=seg from=11 to=32)
RIBOSOMAL_L23 (db=PatternScan db_id=PS00050 from=115 to=130 evalue=0.0 interpro_id=IPR001014 interpro_description=Ribosomal protein L23/L25, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
no description (db=Gene3D db_id=G3DSA:3.30.70.330 from=39 to=132 evalue=2.5e-23 interpro_id=IPR012677 interpro_description=Nucleotide-binding, alpha-beta plait GO=Molecular Function: nucleotide binding (GO:0000166))
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ACD8_51_29
uncultured bacterium, Bacteria
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Not on your lists |
comp(18111..18740)
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50S ribosomal protein L4 n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGB3_9FIRM (db=UNIREF evalue=3.0e-43 bit_score=178.0 identity=40.38 coverage=98.5714285714286)
50S ribosomal protein L4
Ribosomal protein L4 (db=superfamily db_id=SSF52166 from=2 to=207 evalue=6.2e-60 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L4 (db=HMMPfam db_id=PF00573 from=18 to=206 evalue=1.4e-55 interpro_id=IPR002136 interpro_description=Ribosomal protein L4/L1e GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD8_51_30
uncultured bacterium, Bacteria
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comp(18771..19334)
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rplC; 50S ribosomal protein L3
seg (db=Seg db_id=seg from=139 to=151)
L3_bact: 50S ribosomal protein L3 (db=HMMTigr db_id=TIGR03625 from=5 to=186 evalue=1.0e-60 interpro_id=IPR019927 interpro_description=Ribosomal protein L3, bacterial/organelle-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Translation proteins (db=superfamily db_id=SSF50447 from=1 to=186 evalue=5.4e-53 interpro_id=IPR009000 interpro_description=Translation elongation/initiation factor/Ribosomal, beta-barrel)
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