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ACDProt

Rifle_ACD_Proteobacteria_41_1
In projects: Rifle_ACD

Consensus taxonomy: Proteobacteria  →  Bacteria

Metagenomic Context

Properties

Avg. coverage: 1.00 Longest contig: 63.59 Kbp Bin length: 778.97 Kbp GC content: 41.39 %
Contigs count: 58 Features count: 801 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 36 / 55 MC: 25 BSCG 33 / 51 MC: 22 ASCG 0 / 38

Description

Proteobacteria: unclassified

Displaying items 1-50 of 58 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
ACDPROT_6 ACDPROT_580.63528.42
Phylum: Proteobacteria (51.85%)
54 63590 bp 45.64 1.00 93.58
Move to unclassified proteobacteria bin Jill Banfield (11/17/12)
ACDPROT_20 ACDPROT_52.55302.53
Phylum: Proteobacteria (55.56%)
36 55366 bp 40.68 1.00 88.73
May be phage Jill Banfield (11/17/12)
ACDPROT_29 ACDPROT_421773.37549.7
Species: R_Gammaproteobacteria_39_13 (60.61%)
33 37583 bp 35.92 1.00 93.00
ACDPROT_5 ACDPROT_63930.32584.9
Class: Gammaproteobacteria (70.97%)
31 32622 bp 37.50 1.00 81.97
ACDPROT_12 ACDPROT_3276.22849.9
Class: Gammaproteobacteria (71.43%)
28 22887 bp 36.63 1.00 78.46
ACDPROT_35 ACDPROT_54183.21417.13
Class: Deltaproteobacteria (53.85%)
26 21455 bp 45.54 1.00 77.90
hits indicate deltaproteobacteria: pr to 19687, ACD74 (Plasmid) Jill Banfield (11/17/12)
ACDPROT_32 ACDPROT_2415.16855.39
Species: Desulfobulbaceae bacterium BRH_c16a (80%)
25 16917 bp 44.59 1.00 79.52
ACDPROT_13 ACDPROT_137130.20313.7
Species: R_Gammaproteobacteria_39_13 (79.17%)
24 20347 bp 39.10 1.00 86.39
Probably gammaproteobacteria Jill Banfield (11/17/12)
ACDPROT_22 ACDPROT_21146.20106.9
Class: Gammaproteobacteria (78.26%)
23 20144 bp 34.90 1.00 86.97
ACDPROT_11 ACDPROT_7304.22409.26
Phylum: Proteobacteria (54.55%)
22 22455 bp 33.09 1.00 85.76
ACDPROT_34 ACDPROT_501707.19587.8
Domain: Bacteria (100%)
21 19621 bp 37.30 1.00 97.18
ACDPROT_10 ACDPROT_886.22561.84
Phylum: Proteobacteria (60%)
20 22627 bp 44.90 1.00 85.27
ACDPROT_4 ACDPROT_537.17710.25
Species: R_Alphaproteobacteria_42_30 (100%)
19 17750 bp 36.68 1.00 98.21
ACDPROT_7 ACDPROT_4554.16247.11
Phylum: Proteobacteria (50%)
18 16285 bp 37.81 1.00 93.42
ACDPROT_25 ACDPROT_3013.21603.35
Order: Desulfobacterales (61.11%)
18 21665 bp 48.70 1.00 73.57
Probably delta proteobacteria, based on non-ACD db hits Jill Banfield (11/17/12)
ACDPROT_33 ACDPROT_40727.17894.10
Class: Gammaproteobacteria (50%)
18 17932 bp 37.97 1.00 85.81
ACDPROT_16 ACDPROT_113454.21157.10
Class: Gammaproteobacteria (76.47%)
17 21195 bp 36.02 1.00 87.29
ACDPROT_44 ACDPROT_78598.9189.11
Order: Desulfobacterales (50%)
16 9227 bp 45.30 1.00 80.31
ACDPROT_30 ACDPROT_49418.19402.12
Class: Deltaproteobacteria (86.67%)
15 19440 bp 43.67 1.00 78.27
ACDPROT_36 ACDPROT_1204.16747.14
Phylum: Proteobacteria (53.33%)
15 16785 bp 45.53 1.00 94.46
ACDPROT_48 ACDPROT_5123.7751.7
Order: Desulfobacterales (86.67%)
15 7785 bp 38.66 1.00 86.74
ACDPROT_49 ACDPROT_35279.17920.10
Class: Gammaproteobacteria (66.67%)
15 17958 bp 41.66 1.00 91.55
Grammaproteo close to ACD44 Jill Banfield (11/17/12)
ACDPROT_47 ACDPROT_13652.6141.30
Species: Pelobacter propionicus (57.14%)
14 6187 bp 41.04 1.00 70.16
ACDPROT_3 ACDPROT_1344.12877.86
Class: Deltaproteobacteria (61.54%)
13 12943 bp 44.12 1.00 64.02
ACDPROT_18 ACDPROT_46259.8115.6 13 8149 bp 37.60 1.00 91.48
ACDPROT_21 ACDPROT_1390.11074.31
Class: Betaproteobacteria (53.85%)
13 11120 bp 50.76 1.00 91.00
ACDPROT_17 ACDPROT_101644.10992.5
Phylum: Proteobacteria (50%)
12 11026 bp 45.08 1.00 75.48
ACDPROT_19 ACDPROT_14065.16767.10
Species: uncultured bacterium (58.33%)
12 16805 bp 35.30 1.00 95.54
ACDPROT_27 ACDPROT_2519.9828.38
Species: RBG_16_Gammaproteobacteria_37_9_curated (58.33%)
12 9890 bp 32.72 1.00 72.04
ACDPROT_42 ACDPROT_499638.7197.4
Species: RLO_Deltaproteobacteria_40_28 (91.67%)
12 7231 bp 36.16 1.00 54.97
ACDPROT_54 ACDPROT_2502.10911.65
Species: Desulfobulbaceae bacterium BRH_c16a (66.67%)
12 10975 bp 48.09 1.00 57.59
ACDPROT_8 ACDPROT_4696.7114.32
Species: GWB2_Desulfobacterales_56_26_curated (54.55%)
11 7168 bp 57.69 1.00 67.76
ACDPROT_15 ACDPROT_58912.8106.10
Class: Deltaproteobacteria (63.64%)
11 8144 bp 48.37 1.00 79.09
ACDPROT_31 ACDPROT_156.14907.121
Domain: Bacteria (90.91%)
11 14973 bp 38.90 1.00 84.69
ACDPROT_41 ACDPROT_465113.7313.5
Species: R_Gammaproteobacteria_41_20 (70%)
10 7347 bp 38.93 1.00 83.63
ACDPROT_43 ACDPROT_9755.9077.14
Class: Deltaproteobacteria (70%)
10 9115 bp 52.86 1.00 82.55
ACDPROT_55 ACDPROT_105056.9199.14
Species: uncultured bacterium (70%)
10 9237 bp 36.13 1.00 63.33
ACDPROT_26 ACDPROT_113.7772.55
Class: Deltaproteobacteria (55.56%)
9 7836 bp 39.62 1.00 66.77
ACDPROT_28 ACDPROT_33725.8516.11
Species: GWD2_Desulfuromonadales_54_10_curated (50%)
8 8554 bp 50.57 1.00 75.68
ACDPROT_40 ACDPROT_405342.5201.5
Phylum: Proteobacteria (62.5%)
8 5235 bp 36.87 1.00 68.77
ACDPROT_45 ACDPROT_417.7106.115
Species: Desulfocapsa sulfexigens (50%)
8 7172 bp 43.77 1.00 85.88
ACDPROT_9 ACDPROT_44065.6306.12
Class: Deltaproteobacteria (57.14%)
7 6344 bp 50.20 1.00 83.70
ACDPROT_24 ACDPROT_5250.7013.10
Class: Gammaproteobacteria (85.71%)
7 7051 bp 35.65 1.00 94.16
ACDPROT_37 ACDPROT_101.6500.39
Order: Desulfobacterales (71.43%)
7 6562 bp 46.97 1.00 90.43
ACDPROT_38 ACDPROT_228944.5511.5
Species: R_Gammaproteobacteria_41_20 (57.14%)
7 5545 bp 39.87 1.00 86.19
ACDPROT_46 ACDPROT_99303.7541.10
Class: Gammaproteobacteria (57.14%)
7 7579 bp 40.10 1.00 91.36
ACDPROT_1 ACDPROT_70899.3076.11
Species: RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated (83.33%)
6 3114 bp 52.70 1.00 61.37
ACDPROT_58 ACD79_8626.7806.21
Species: uncultured bacterium (83.33%)
6 7846 bp 33.52 1.00 82.13
ACDPROT_14 ACDPROT_43.6143.107
Species: GWB2_Desulfobacterales_56_26_curated (50%)
6 6209 bp 45.16 1.00 99.24
ACDPROT_39 ACDPROT_92594.5136.9
Class: Gammaproteobacteria (83.33%)
6 5174 bp 36.34 1.00 74.39
Displaying items 1-50 of 58 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.