ggKbase home page
Advanced Search
Search Help

ACDOP11

Rifle_ACD_Microgenomates_40_1
In projects: Rifle_ACD  |  all_cpr_genomes  |  ggK_CPR

Consensus taxonomy: Microgenomates  →  Bacteria

Metagenomic Context

Properties

Avg. coverage: 1.00 Longest contig: 45.37 Kbp Bin length: 970.71 Kbp GC content: 39.76 %
Contigs count: 61 Features count: 1107 rRNAs count: 1 tRNAs count: 0

Genome completeness

partial RP 43 / 55 MC: 34 BSCG 39 / 51 MC: 27 ASCG 0 / 38

Description

OP11: unclassified

Displaying items 1-50 of 61 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
ACDOP11_28 ACDOP11_12285.39593.24
Phylum: Microgenomates (73.91%)
46 39639 bp 40.00 1.00 77.68
ACDOP11_19 ACDOP11_5717.38287.10
Domain: Bacteria (88.89%)
45 38325 bp 38.23 1.00 91.92
ACDOP11_9 ACDOP11_23881.33433.10
Phylum: Microgenomates (59.09%)
44 33471 bp 39.27 1.00 83.14
ACDOP11_39 ACDOP11_8514.45323.26
Phylum: Microgenomates (50%)
40 45369 bp 40.43 1.00 81.52
ACDOP11_7 ACDOP11_8411.38438.24
Phylum: Microgenomates (56.76%)
37 38484 bp 41.63 1.00 92.08
ACDOP11_30 ACDOP11_14025.31991.25
Phylum: Microgenomates (61.11%)
36 32037 bp 41.24 1.00 90.47
ACDOP11_33 ACDOP11_37791.21023.10
Class: Levybacteria (77.14%)
35 21061 bp 35.37 1.00 87.96
OP11 closest to ACD50. Inc RpoA and many ribosomal proteins recA closest to ACD37 Jill Banfield (11/17/12)
ACDOP11_2 ACDOP11_329648.18454.7
Domain: Bacteria (87.5%)
32 18488 bp 35.90 1.00 82.09
Contig fragmented by N. Does not seem to be code 4 Jill Banfield (11/17/12)
ACDOP11_14 ACDOP11_39112.25580.9
Phylum: Microgenomates (81.25%)
32 25618 bp 40.22 1.00 92.41
ACDOP11_5 ACDOP11_1311.35022.29
Phylum: Microgenomates (53.33%)
30 35068 bp 38.18 1.00 89.73
ACDOP11_6 ACDOP11_10655.27714.24
Phylum: Microgenomates (60%)
30 27760 bp 41.37 1.00 86.23
ACDOP11_25 ACDOP11_4299.18139.25
Phylum: Microgenomates (81.48%)
27 18185 bp 40.37 1.00 90.93
ACDOP11_36 ACDOP11_39718.26019.9
Domain: Bacteria (92.59%)
27 26057 bp 37.87 1.00 95.82
ACDOP11_40 ACDOP11_10843.21105.23
Phylum: Microgenomates (66.67%)
27 21145 bp 39.63 1.00 87.61
ACDOP11_18 ACDOP11_6621.24110.29
Domain: Bacteria (84.62%)
26 24156 bp 35.60 1.00 98.88
One link to 5 kb contig: minassembly clearly to ID= "1086", contig ACDUNK_494, 5281 bp (apparently OP11) Jill Banfield (11/17/12)
ACDOP11_21 ACDOP11_75116.21893.9
Species: RBG_16_RIF_OP11_02_41_13_curated (57.69%)
26 21931 bp 39.93 1.00 89.08
pr 16952 then possibly to ACD52: 319402 then to 51559 ACD57 Jill Banfield (11/17/12)
ACDOP11_31 ACDOP11_34992.23905.9
Species: RBG_16_RIF_OP11_02_41_13_curated (65.38%)
26 23943 bp 39.92 1.00 90.79
loose link to ACD25 (OP11) Jill Banfield (11/17/12)
ACDOP11_1 ACDOP11_6569.22973.24
Phylum: Microgenomates (69.57%)
23 23019 bp 41.66 1.00 88.21
ACDOP11_44 ACDOP11_8023.15066.23
Class: Collierbacteria (56.52%)
23 15112 bp 42.73 1.00 97.06
ACDOP11_37 ACDOP11_41012.19440.9
Species: RBG_16_RIF_OP11_02_41_13_curated (54.55%)
22 19478 bp 38.82 1.00 84.33
ACDOP11_20 ACDOP11_56548.25424.10
Species: RBG_16_RIF_OP11_02_41_13_curated (80.95%)
21 25462 bp 37.66 1.00 94.60
ACDOP11_16 ACDOP11_4532.13631.31
Species: GWA2_OP11_42_17 (85%)
20 13685 bp 40.91 1.00 90.87
Manual curation suggests links to 14354, ACDUNK Jill Banfield (11/17/12)
ACDOP11_38 ACDOP11_5473.14062.10
Class: Levybacteria (57.89%)
19 14100 bp 36.86 1.00 88.85
ACDOP11_52 ACDOP11_71321.17708.11
Phylum: Microgenomates (89.47%)
19 17746 bp 34.90 1.00 95.50
ACDOP11_3 ACDOP11_30926.18442.9
Species: GWD2_WWE3_42_34 (50%)
18 18480 bp 38.23 1.00 89.09
ACDOP11_13 ACDOP11_4660.11541.27
Domain: Bacteria (66.67%)
18 11595 bp 41.49 1.00 66.39
ACDOP11_50 ACDOP11_914.19439.24
Phylum: Microgenomates (66.67%)
18 19485 bp 41.75 1.00 95.66
ACDOP11_11 ACDOP11_2343.16136.31
Phylum: Microgenomates (70.59%)
17 16190 bp 39.41 1.00 80.86
ACDOP11_29 ACDOP11_207822.8822.6
Domain: Bacteria (58.82%)
17 8856 bp 38.72 1.00 72.15
ACDOP11_49 ACDOP11_44307.17087.9
Species: R_OP11_Woesebacteria_38_26 (94.12%)
17 17121 bp 34.78 1.00 97.41
ACDOP11_4 ACDOP11_2648.10884.13
Phylum: Microgenomates (56.25%)
16 10922 bp 42.47 1.00 96.82
ACDOP11_17 ACDOP11_8817.15907.25
Species: GWA2_OP11_42_17 (50%)
16 15953 bp 38.89 1.00 71.40
ACDOP11_54 ACDOP11_1783.7477.7
Species: ACD13 (68.75%)
16 7511 bp 43.23 1.00 95.42
ACDOP11_8 ACDOP11_10313.7811.23
Species: GWA2_OP11_42_17 (50%)
14 7857 bp 44.39 1.00 80.60
ACDOP11_10 ACDOP11_3038.9630.23
Species: GWA2_OP11_42_17 (85.71%)
14 9676 bp 41.66 1.00 86.07
ACDOP11_53 ACDOP11_14344.13494.24
Species: GWA2_OP11_42_17 (71.43%)
14 13540 bp 42.67 1.00 90.40
ACDOP11_24 ACDOP11_177252.13819.8
Domain: Bacteria (69.23%)
13 13853 bp 33.96 1.00 99.27
ACDOP11_15 ACDOP11_145024.11473.6
Phylum: Microgenomates (58.33%)
12 11507 bp 44.09 1.00 79.33
ACDOP11_12 ACDOP11_5101.12253.7
Species: GWC2_OP11_44_18 (81.82%)
11 12287 bp 39.95 1.00 97.22
ACDOP11_48 ACDOP11_6751.10030.27
Phylum: Microgenomates (81.82%)
11 10076 bp 42.18 1.00 81.16
ACDOP11_35 ACDOP11_78166.6829.9
Species: RBG_16_RIF_OP11_02_41_13_curated (80%)
10 6867 bp 40.19 1.00 89.21
ACDOP11_45 ACDOP11_394758.7160.6
Phylum: Microgenomates (80%)
10 7194 bp 41.99 1.00 89.57
ACDOP11_47 ACDOP11_341359.6474.5
Domain: Bacteria (50%)
10 6508 bp 40.00 1.00 73.52
ACDOP11_22 ACDOP11_186706.10180.6
Domain: Bacteria (66.67%)
9 10214 bp 48.85 1.00 93.52
ACDOP11_51 ACDOP11_22738.6234.11
Species: ACD57 (55.56%)
9 6272 bp 46.16 1.00 99.25
ACDOP11_56 ACDOP11_9974.7132.26
Species: RAAC19 (66.67%)
9 7186 bp 40.83 1.00 57.70
ACDOP11_57 ACDOP11_14354.10304.25
Species: GWA2_OP11_42_17 (77.78%)
9 10350 bp 42.97 1.00 79.62
ACDOP11_26 ACDOP11_1242.8769.9
Species: ACD37 (62.5%)
8 8807 bp 33.34 1.00 97.87
ACDOP11_43 ACDOP11_4365.6762.10
Domain: Bacteria (87.5%)
8 6800 bp 29.54 1.00 89.65
ACDOP11_61 ACDOP11_122241.5584.6
Phylum: Microgenomates (62.5%)
8 5618 bp 48.29 1.00 80.37
Displaying items 1-50 of 61 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.