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13_1_40cm_2_scaffold_15105

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_15105_1
unknown

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comp(274..555)
DNA (282bp) protein (94aa)

This feature has no annotations

13_1_40cm_2_scaffold_15105_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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731..919
DNA (189bp) protein (63aa)
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] Tax=CSP1_6_Rokubacteria
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] id=14625209 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_15105_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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935..1714
DNA (780bp) protein (260aa)
short-chain reductase/dehydrogenase 3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacter
Putative short-chain reductase/dehydrogenase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z6G2_AZOL4 rbh
putative short-chain reductase/dehydrogenase
13_1_40cm_2_scaffold_15105_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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1817..3127
DNA (1311bp) protein (437aa)
amino acid/amide ABC transporter substrate-binding protein, HAAT family id=14625210 bin=bin7_NC10_sister species=Afipia sp. 1NLS2 genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
amino acid/amide ABC transporter substrate-binding protein, HAAT family Tax=CSP1_6_Rokubacteria
extracellular ligand-binding receptor
13_1_40cm_2_scaffold_15105_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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3217..3921
DNA (705bp) protein (235aa)
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC transporter ATP-binding protein id=4960490 bin=GWC2_Methylomirabilis_70_24 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter
13_1_40cm_2_scaffold_15105_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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3921..4634
DNA (714bp) protein (238aa)
branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family id=3772781 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
branched-chain amino acid ABC transporter ATP-binding protein
13_1_40cm_2_scaffold_15105_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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4631..5500
DNA (870bp) protein (290aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein id=14625213 bin=bin7_NC10_sister species=Haloterrigena turkmenica genus=Haloterrigena taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=CSP1_6_Rokubacteria
amino acid/amide ABC transporter membrane protein 1, HAAT family
13_1_40cm_2_scaffold_15105_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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5497..6447
DNA (951bp) protein (317aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=CSP1_6_Rokubacteria
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein id=14625214 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator
13_1_40cm_2_scaffold_15105_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(6454..7554)
DNA (1101bp) protein (367aa)
putative hybrid sensor histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
putative hybrid sensor histidine kinase (EC:2.7.13.3)
Putative Hybrid sensor histidine kinase id=3368251 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_15105_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(7551..8420)
DNA (870bp) protein (290aa)
signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3)
integral membrane sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component system sensor histidine kinase id=3368252 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 10 items

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