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13_1_40cm_2_scaffold_6145

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_6145_1
unknown

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comp(3..149)
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_40cm_2_scaffold_6145_2
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(146..730)
DNA (585bp) protein (195aa)
Probable chemoreceptor glutamine deamidase CheD {ECO:0000256|HAMAP-Rule:MF_01440}; EC=3.5.1.44 {ECO:0000256|HAMAP-Rule:MF_01440};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus M
Probable chemoreceptor glutamine deamidase CheD n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGJ9_9BACT
MCP proteins methylation stimulator CheD
13_1_40cm_2_scaffold_6145_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(727..1608)
DNA (882bp) protein (294aa)
cheR; chemotaxis protein methyltransferase (EC:2.1.1.80) Tax=GWA2_Rokubacteria_70_23_curated
cheR; chemotaxis protein methyltransferase (EC:2.1.1.80)
Chemotaxis protein methyltransferase id=2322395 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_6145_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1586..2062)
DNA (477bp) protein (159aa)
Chemotaxis signal transduction protein CheW id=4764260 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cheW; chemotaxis signal transduction protein CheW; K03408 purine-binding chemotaxis protein CheW Tax=GWA2_Rokubacteria_70_23_curated
cheW; chemotaxis signal transduction protein CheW
13_1_40cm_2_scaffold_6145_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2065..3810)
DNA (1746bp) protein (582aa)
Histidine kinase, HAMP region:chemotaxis sensory transducer id=2322387 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
histidine kinase, HAMP region:chemotaxis sensory transducer Tax=GWA2_Rokubacteria_73_35_curated
histidine kinase, HAMP region:chemotaxis sensory transducer
13_1_40cm_2_scaffold_6145_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3836..4414)
DNA (579bp) protein (193aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=2322386 bin=GWA2_Methylomirabilis_73_35 species=Thiorhodococcus drewsii genus=Thiorhodococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_6145_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4411..6171)
DNA (1761bp) protein (587aa)
cheA; chemotaxis protein CheA (EC:2.7.3.-); K03407 two-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3] Tax=GWA2_Rokubacteria_73_35_curated
Chemotaxis protein histidine kinase CheA id=4764263 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
CheW domain protein
13_1_40cm_2_scaffold_6145_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6168..6548)
DNA (381bp) protein (127aa)
Chemotaxis protein CheY id=2322393 bin=GWA2_Methylomirabilis_73_35 species=Gluconobacter oxydans genus=Gluconobacter taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY Tax=GWA2_Rokubacteria_73_35_curated
two-component response regulator
13_1_40cm_2_scaffold_6145_9
unknown

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comp(6545..7207)
DNA (663bp) protein (221aa)

This feature has no annotations

13_1_40cm_2_scaffold_6145_10
Desulfurispirillum indicum, Desulfurispirillum, Chrysiogenales, Chrysiogenetes, Chrysiogenetes, Bacteria

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comp(7204..7551)
DNA (348bp) protein (116aa)
Response regulator receiver n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W5R1_DESIS
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:ADU66092.1}; TaxID=653733 species="Bacteria; Chrysiogenetes; Chrysiogenales; Chrysiogenaceae; Desulfurispirillum.;" source="Desulfurispirillum indicum (st
13_1_40cm_2_scaffold_6145_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7806..8972)
DNA (1167bp) protein (389aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3960244 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_6145_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9095..10474
DNA (1380bp) protein (460aa)
pyridoxal-phosphate dependent TrpB-like enzyme; K06001 tryptophan synthase beta chain [EC:4.2.1.20] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pyridoxal-phosphate dependent TrpB-like enzyme; K06001 tryptophan synthase beta chain [EC:4.2.1.20] id=14627587 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
pyridoxal-phosphate dependent TrpB-like enzyme
13_1_40cm_2_scaffold_6145_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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10487..11485
DNA (999bp) protein (333aa)
quaternary amine uptake ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein id=14627586 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10 rbh
quaternary amine uptake ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein Tax=CSP1_6_Rokubacteria
quaternary amine uptake ABC transporter substrate-binding protein
13_1_40cm_2_scaffold_6145_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11565..12323
DNA (759bp) protein (253aa)
ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit id=3960241 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrate/sulfonate/bicarbonate ABC transporter permease; K02050 NitT/TauT family transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
nitrate/sulfonate/bicarbonate ABC transporter permease
13_1_40cm_2_scaffold_6145_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12429..13178
DNA (750bp) protein (250aa)
ABC transporter, ATP-binding protein id=3960160 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter ATP-binding protein
13_1_40cm_2_scaffold_6145_16
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13835..14791
DNA (957bp) protein (319aa)
Family 3 adenylate cyclase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ38_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ETW92716.1}; Flags: Fragment;; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheone
adenylate/guanylate cyclase
13_1_40cm_2_scaffold_6145_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15060..15467
DNA (408bp) protein (136aa)
hypothetical protein id=3875406 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_2_scaffold_6145_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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15491..16558
DNA (1068bp) protein (356aa)
amidohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Hydrolase, carbon-nitrogen family id=3229907 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Providencia taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase
13_1_40cm_2_scaffold_6145_19
unknown

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16750..16896
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_40cm_2_scaffold_6145_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(16904..17377)
DNA (474bp) protein (158aa)
lipopolysaccharide heptosyltransferase II; K02843 heptosyltransferase II [EC:2.4.-.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Glycosyl transferase, family 9 id=3960148 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heptosyltransferase II
Displaying 20 items

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