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13_1_40cm_2_scaffold_8299

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_8299_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(4..1275)
DNA (1272bp) protein (424aa)
gdh; glutamate dehydrogenase (EC:1.4.1.3) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
gdh; glutamate dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase id=3714120 bin=GWA2_Methylomirabilis_73_35 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_40cm_2_scaffold_8299_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1363..1794
DNA (432bp) protein (144aa)
putative transcription factor IscR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative transcription factor IscR id=14625361 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
BadM/Rrf2 family transcriptional regulator
13_1_40cm_2_scaffold_8299_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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1808..3034
DNA (1227bp) protein (409aa)
iscS; cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase id=3714107 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_40cm_2_scaffold_8299_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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3048..3461
DNA (414bp) protein (138aa)
nitrogen fixation protein, NifU-like protein; K04488 nitrogen fixation protein NifU and related proteins Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
iscU; iron-sulfur cluster assembly protein IscU; K04488 nitrogen fixation protein NifU and related proteins id=14625363 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
scaffold protein
13_1_40cm_2_scaffold_8299_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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3483..3812
DNA (330bp) protein (110aa)
iscA; iron-sulfur cluster assembly protein IscA; K13628 iron-sulfur cluster assembly protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Iron-sulfur cluster assembly protein IscA id=3714096 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iscA; iron-sulfur cluster assembly protein IscA
13_1_40cm_2_scaffold_8299_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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3896..4486
DNA (591bp) protein (197aa)
hscB; co-chaperone protein HscB; K04082 molecular chaperone HscB Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Co-chaperone protein HscB (Hsc20) id=3714094 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hscB; co-chaperone protein HscB
13_1_40cm_2_scaffold_8299_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4464..5651
DNA (1188bp) protein (396aa)
hscA; chaperone protein HscA; K04043 molecular chaperone DnaK Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hscA; chaperone protein HscA; K04043 molecular chaperone DnaK id=14625366 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hscA; chaperone protein HscA
Displaying 7 items

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