ggKbase home page

13_1_40cm_2_scaffold_8950

Search features with annotation key words

Displaying 18 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_8950_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2..118
DNA (117bp) protein (39aa)
glycine cleavage system t protein (EC:2.1.2.10); K06980 Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_2_scaffold_8950_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

225..2255
DNA (2031bp) protein (677aa)
hypothetical protein; K06888 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4996873 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_40cm_2_scaffold_8950_3
unknown

Not on your lists

comp(2776..2865)
DNA (90bp) protein (30aa)

This feature has no annotations

13_1_40cm_2_scaffold_8950_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

3152..3763
DNA (612bp) protein (204aa)
peptidase M50 id=24403803 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptidase M50 Tax=RBG_16_RIF_WS3X_71_46_curated
peptidase M50
13_1_40cm_2_scaffold_8950_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

3862..4230
DNA (369bp) protein (123aa)
hypothetical protein id=14626717 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein
13_1_40cm_2_scaffold_8950_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4307..6256
DNA (1950bp) protein (650aa)
AMP-dependent synthetase and ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1] Tax=GWA2_Rokubacteria_73_35_curated
AMP-dependent synthetase and ligase id=4426329 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
acetyl-coenzyme A synthetase
13_1_40cm_2_scaffold_8950_7
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6253..7113
DNA (861bp) protein (287aa)
Blr6472 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89G73_BRADU
hypothetical protein Tax=RBG_16_Betaproteobacteria_64_18_curated
hypothetical protein
13_1_40cm_2_scaffold_8950_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7345..7551
DNA (207bp) protein (69aa)
thiamine biosynthesis protein ThiS Tax=GWA2_Rokubacteria_73_35_curated
thiamine biosynthesis protein ThiS id=4426339 bin=GWA2_Methylomirabilis_73_35 species=Pseudomonas sp. S9 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Sulfur carrier protein ThiS
13_1_40cm_2_scaffold_8950_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7602..8381
DNA (780bp) protein (260aa)
thiG; thiazole synthase; K03149 thiamine biosynthesis ThiG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiazole synthase id=5006704 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiG; thiazole synthase
13_1_40cm_2_scaffold_8950_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8369..8992
DNA (624bp) protein (208aa)
thiamine monophosphate synthase; K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiamine-phosphate synthase id=5006705 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
thiamine-phosphate synthase
13_1_40cm_2_scaffold_8950_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10366..10794
DNA (429bp) protein (143aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14629111 bin=bin8_Chloro species=Verrucomicrobium sp. 3C genus=Verrucomicrobium taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin8_Chloro organism_group=Chloroflexi
hypothetical protein
13_1_40cm_2_scaffold_8950_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10814..11701)
DNA (888bp) protein (296aa)
two-component hybrid sensor and regulator Tax=GWA2_Rokubacteria_73_35_curated
Two-component hybrid sensor and regulator id=5006707 bin=GWA2_Methylomirabilis_73_35 species=Azospirillum sp. genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
putative hybrid sensor histidine kinase
13_1_40cm_2_scaffold_8950_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11774..13102
DNA (1329bp) protein (443aa)
amidohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Amidohydrolase id=4800307 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidohydrolase
13_1_40cm_2_scaffold_8950_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13108..13911
DNA (804bp) protein (268aa)
ABC transporter periplasmic ligand binding protein; K02016 iron complex transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Periplasmic binding protein id=5006709 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
periplasmic-binding protein
13_1_40cm_2_scaffold_8950_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14081..15529
DNA (1449bp) protein (483aa)
tldD; peptidase TldD Tax=GWA2_Rokubacteria_73_35_curated
Putative peptidase TldD id=4888043 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
tldD; peptidase TldD
13_1_40cm_2_scaffold_8950_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16146..16922
DNA (777bp) protein (259aa)
pmbA; protease pmbA; K03592 PmbA protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase U62 id=5006712 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_8950_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16946..17731
DNA (786bp) protein (262aa)
TatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Deoxyribonuclease id=4800315 bin=GWC2_Methylomirabilis_70_16 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
deoxyribonuclease
13_1_40cm_2_scaffold_8950_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17871..18230
DNA (360bp) protein (120aa)
amidohydrolase; K01465 dihydroorotase [EC:3.5.2.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
dihydroorotase; K01465 dihydroorotase [EC:3.5.2.3] id=14627013 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
dihydroorotase
Displaying 18 items

View Taxonomy