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13_1_40cm_4_scaffold_1310

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Displaying 14 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1310_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2..1468
DNA (1467bp) protein (489aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
hypothetical protein n=1 Tax=unclassified candidate division EM 19 RepID=UPI0003805964
13_1_40cm_4_scaffold_1310_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1468..1800
DNA (333bp) protein (111aa)
ferredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ferredoxin id=4153760 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ferredoxin
13_1_40cm_4_scaffold_1310_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


1803..3497
DNA (1695bp) protein (565aa)
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15) id=14625411 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15)
13_1_40cm_4_scaffold_1310_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3609..4076
DNA (468bp) protein (156aa)
hypothetical protein; K09748 ribosome maturation factor RimP Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosome maturation factor RimP id=1723420 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosome maturation protein RimP
13_1_40cm_4_scaffold_1310_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4101..5423
DNA (1323bp) protein (441aa)
NusA antitermination factor; K02600 N utilization substance protein A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NusA antitermination factor id=1723421 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NusA antitermination factor
13_1_40cm_4_scaffold_1310_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5851..8331
DNA (2481bp) protein (827aa)
Translation initiation factor IF-2 id=1723423 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation factor IF-2; K02519 translation initiation factor IF-2 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
infB; translation initiation factor IF-2
13_1_40cm_4_scaffold_1310_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

8354..8644
DNA (291bp) protein (97aa)
infB; translation initiation factor IF-2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Uncharacterized protein id=1723424 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1310_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8644..8997
DNA (354bp) protein (118aa)
ribosome-binding factor A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosome-binding factor A id=1723425 bin=GWA2_Methylomirabilis_73_35 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosome-binding factor A
13_1_40cm_4_scaffold_1310_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

8994..10001
DNA (1008bp) protein (336aa)
exopolyphosphatase-related proteins; K06881 phosphoesterase RecJ domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Exopolyphosphatase-like enzyme id=1723426 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
exopolyphosphatase-related proteins
13_1_40cm_4_scaffold_1310_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9998..10933
DNA (936bp) protein (312aa)
tRNA pseudouridine synthase b; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=GWA2_Rokubacteria_73_35_curated
tRNA pseudouridine synthase B (EC:4.2.1.70)
tRNA pseudouridine synthase B id=1723427 bin=GWA2_Methylomirabilis_73_35 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1310_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10896..11813
DNA (918bp) protein (306aa)
FMN adenylyltransferase; riboflavin kinase (EC:2.7.7.2 2.7.1.26); K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
FMN adenylyltransferase; riboflavin kinase (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein RibF id=1723429 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1310_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


11941..12210
DNA (270bp) protein (90aa)
30S ribosomal protein S15 id=1723473 bin=GWA2_Methylomirabilis_73_35 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S15
13_1_40cm_4_scaffold_1310_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12281..14422
DNA (2142bp) protein (714aa)
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) id=14625422 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8)
13_1_40cm_4_scaffold_1310_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14435..14764
DNA (330bp) protein (110aa)
ymxG; hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ymxG; hypothetical protein id=14625423 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
peptidase M16-like protein
Displaying 14 items

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