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13_1_40cm_4_scaffold_16335

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_16335_1
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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3..134
DNA (132bp) protein (44aa)
Uncharacterized protein {ECO:0000313|EMBL:EYF00429.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondrom
hypothetical protein
13_1_40cm_4_scaffold_16335_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(268..1659)
DNA (1392bp) protein (464aa)
dihydropyrimidinase; K01464 dihydropyrimidinase [EC:3.5.2.2] Tax=GWA2_Rokubacteria_70_23_curated
dihydropyrimidinase (EC:3.5.2.2)
Dihydropyrimidinase id=3971522 bin=GWC2_Methylomirabilis_70_24 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_16335_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(1673..2704)
DNA (1032bp) protein (344aa)
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein id=3971523 bin=GWC2_Methylomirabilis_70_24 species=Bacillus methanolicus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_16335_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(2737..3486)
DNA (750bp) protein (250aa)
ABC transporter, membrane spanning protein (Nitrate/sulfonates) id=3971524 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Agrobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ssuC; ABC transporter, membrane spanning protein (nitrate/sulfonates); K15554 sulfonate transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter permease protein (nitrate/sulfonates)
13_1_40cm_4_scaffold_16335_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(3483..4268)
DNA (786bp) protein (262aa)
ABC transporter related Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC transporter-related protein id=3348592 bin=GWF2_Methylomirabilis_70_14 species=Methanocaldococcus villosus genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter releated protein
13_1_40cm_4_scaffold_16335_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4268..5095)
DNA (828bp) protein (276aa)
ABC transporter permease; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC-type transporter, integral membrane subunit id=3971526 bin=GWC2_Methylomirabilis_70_24 species=Rhodococcus triatomae genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
nitrate/sulfonate/bicarbonate ABC transporter permease
13_1_40cm_4_scaffold_16335_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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5450..6376
DNA (927bp) protein (309aa)
amidohydrolase; K01485 cytosine deaminase [EC:3.5.4.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein n=1 Tax=Streptomyces sp. HmicA12 RepID=UPI0003769FBB
amidohydrolase
13_1_40cm_4_scaffold_16335_8
unknown

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comp(7275..7655)
DNA (381bp) protein (127aa)

This feature has no annotations

13_1_40cm_4_scaffold_16335_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(7665..8861)
DNA (1197bp) protein (399aa)
formyl-CoA transferase (EC:2.8.3.16); K07749 formyl-CoA transferase [EC:2.8.3.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Formyl-coenzyme A transferase n=1 Tax=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) RepID=FCTA_STRAW
formyl-coenzyme A transferase
13_1_40cm_4_scaffold_16335_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(9035..10309)
DNA (1275bp) protein (425aa)
thiamine pyrophosphate protein central region; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiamine pyrophosphate protein id=4148695 bin=GWC2_Syntrophobacterales_56_13 species=Bacillus bataviensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
thiamine pyrophosphate protein central region
13_1_40cm_4_scaffold_16335_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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11008..12033
DNA (1026bp) protein (342aa)
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative sugar uptake ABC transporter periplasmic solute-binding protein id=2228895 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_16335_12
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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12046..12612
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037C9B61
Uncharacterized protein {ECO:0000313|EMBL:ETW99261.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
luciferase-like monooxygenase
Displaying 12 items

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