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13_1_40cm_4_scaffold_22178

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_22178_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2..709
DNA (708bp) protein (236aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase (EC:3.5.1.-)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase id=2287875 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium HF0770_27F21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_22178_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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757..1323
DNA (567bp) protein (189aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=2287876 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_22178_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1323..3551
DNA (2229bp) protein (743aa)
ntrY; nitrogen regulation sensor histidine kinase NtrY, HAMP and PAS domain-containing; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] Tax=RIF
nitrogen regulation protein NtrY; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] id=14625170 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
multi-sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_22178_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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3555..4922
DNA (1368bp) protein (456aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=2085290 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=GWA2_Rokubacteria_73_35_curated
Fis family transcriptional regulator
13_1_40cm_4_scaffold_22178_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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5001..5771
DNA (771bp) protein (257aa)
xthA; exodeoxyribonuclease III (EC:3.1.11.2) Tax=GWC2_Rokubacteria_70_16_curated
Exodeoxyribonuclease III id=4792717 bin=GWC2_Methylomirabilis_70_16 species=Deinococcus peraridilitoris genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
exodeoxyribonuclease III
13_1_40cm_4_scaffold_22178_6
unknown

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comp(5606..6139)
DNA (534bp) protein (178aa)

This feature has no annotations

13_1_40cm_4_scaffold_22178_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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6555..6908
DNA (354bp) protein (118aa)
PyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (EC:2.4.2.9); K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] Tax=RI
PyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR id=4792710 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_22178_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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6911..7846
DNA (936bp) protein (312aa)
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2) id=14625173 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2)
13_1_40cm_4_scaffold_22178_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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8373..9137
DNA (765bp) protein (255aa)
pyrC; dihydroorotase (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase id=4530400 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_22178_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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9292..10416
DNA (1125bp) protein (375aa)
carA; carbamoyl phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit (EC:6.3.5.5) id=14625175 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
carA; carbamoyl phosphate synthase small subunit
13_1_40cm_4_scaffold_22178_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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10425..10691
DNA (267bp) protein (89aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4530407 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_22178_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(11259..11669)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Coraliomargarita sp. CAG:312 RepID=R7LEN4_9BACT
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_1_40cm_4_scaffold_22178_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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12221..13057
DNA (837bp) protein (279aa)
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) id=14625178 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
carbamoyl-phosphate synthase large subunit
Displaying 13 items

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