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13_1_40cm_4_scaffold_7501

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_7501_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(178..513)
DNA (336bp) protein (112aa)
transcriptional regulator y4dJ id=3830287 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus elgii genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator y4dJ Tax=GWA2_Rokubacteria_73_35_curated
Cro/CI family transcriptional regulator
13_1_40cm_4_scaffold_7501_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1571..2314)
DNA (744bp) protein (248aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4231232 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_7501_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2624..3622
DNA (999bp) protein (333aa)
aminodeoxychorismate lyase; K07082 UPF0755 protein Tax=GWA2_Rokubacteria_73_35_curated
aminodeoxychorismate lyase id=14627099 bin=bin7_NC10_sister species=Thermodesulfatator atlanticus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
aminodeoxychorismate lyase
13_1_40cm_4_scaffold_7501_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3644..4315
DNA (672bp) protein (224aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
1-acyl-sn-glycerol-3-phosphate acyltransferases id=4231028 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
1-acyl-sn-glycerol-3-phosphate acyltransferase
13_1_40cm_4_scaffold_7501_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4308..4553)
DNA (246bp) protein (82aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_7501_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4974..5669
DNA (696bp) protein (232aa)
argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Argininosuccinate lyase id=4231026 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
argininosuccinate lyase
13_1_40cm_4_scaffold_7501_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5666..6742
DNA (1077bp) protein (359aa)
Fibronectin, type III Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Fibronectin, type III id=2164681 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fibronectin, type III
13_1_40cm_4_scaffold_7501_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6778..8028
DNA (1251bp) protein (417aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=GWA2_Rokubacteria_73_35_curated
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase id=2164678 bin=GWA2_Methylomirabilis_73_35 species=Leptospirillum ferrodiazotrophum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_7501_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8025..8912
DNA (888bp) protein (296aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
Dihydrodipicolinate synthase id=4801457 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_7501_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8922..9776
DNA (855bp) protein (285aa)
dapB; dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dihydrodipicolinate reductase (EC:1.3.1.26)
Dihydrodipicolinate reductase id=2164669 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_7501_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9787..10545
DNA (759bp) protein (253aa)
ureidoglycolate lyase (EC:4.3.2.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase id=14627106 bin=bin7_NC10_sister species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_7501_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10545..10859
DNA (315bp) protein (105aa)
folQ; dihydroneopterin aldolase (EC:4.1.2.25); K01633 dihydroneopterin aldolase [EC:4.1.2.25] Tax=GWA2_Rokubacteria_73_35_curated
folB; dihydroneopterin aldolase (EC:4.1.2.25)
Dihydroneopterin aldolase id=2164663 bin=GWA2_Methylomirabilis_73_35 species=Streptococcus ictaluri genus=Streptococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_7501_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10859..11407
DNA (549bp) protein (183aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] Tax=RIFCSPLOWO2_02_FULL_Rokubact
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase id=2164593 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
13_1_40cm_4_scaffold_7501_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11414..11923
DNA (510bp) protein (170aa)
ECF subfamily RNA polymerase sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=4801469 bin=GWC2_Methylomirabilis_70_16 species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RNA polymerase sigma factor RpoE
13_1_40cm_4_scaffold_7501_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11923..12627
DNA (705bp) protein (235aa)
id=14627111 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14627111 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_7501_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12740..13009
DNA (270bp) protein (90aa)
Prevent-host-death family protein id=3773177 bin=GWC2_Methylomirabilis_70_24 species=Deinococcus geothermalis genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
prevent-host-death family protein Tax=GWA2_Rokubacteria_70_23_curated
prevent-host-death family protein
Displaying 16 items

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