ggKbase home page

13_1_40cm_4_scaffold_8786

Search features with annotation key words

Displaying 14 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_8786_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13..1392)
DNA (1380bp) protein (460aa)
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Extracellular solute-binding protein family 5 id=1884954 bin=GWA2_Methylomirabilis_73_35 species=Oceanithermus profundus genus=Oceanithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 5 extracellular solute-binding protein
13_1_40cm_4_scaffold_8786_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1614..3059)
DNA (1446bp) protein (482aa)
polynucleotide adenylyltransferase/metal dependent phosphohydrolase; K00970 poly(A) polymerase [EC:2.7.7.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase id=1884950 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_8786_3
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

3108..3917
DNA (810bp) protein (270aa)
Enoyl-CoA hydratase (Fad-2) n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O29572_ARCFU
fad-2; enoyl-CoA hydratase
Enoyl-CoA hydratase (Fad-2) {ECO:0000313|EMBL:AAB90553.1}; TaxID=224325 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus fulgidu
13_1_40cm_4_scaffold_8786_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3960..4844)
DNA (885bp) protein (295aa)
recombinase A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4426872 bin=GWC2_Methylomirabilis_70_16 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_8786_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4856..6415)
DNA (1560bp) protein (520aa)
ligB; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=GWA2_Rokubacteria_73_35_curated
ligB; ATP-dependent DNA ligase (EC:6.5.1.1)
Probable DNA ligase id=1884939 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_8786_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6483..8399
DNA (1917bp) protein (639aa)
Metal dependent phosphohydrolase id=1884935 bin=GWA2_Methylomirabilis_73_35 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase Tax=GWA2_Rokubacteria_73_35_curated
metal dependent phosphohydrolase
13_1_40cm_4_scaffold_8786_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8359..8538)
DNA (180bp) protein (60aa)
hypothetical protein id=1884930 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_8786_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8560..9201)
DNA (642bp) protein (214aa)
LexA repressor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
LexA repressor id=1884925 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LexA repressor
13_1_40cm_4_scaffold_8786_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9272..9745)
DNA (474bp) protein (158aa)
putative twin-arginine translocation protein TatB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sec-independent protein translocase protein TatA id=1884921 bin=GWA2_Methylomirabilis_73_35 species=Synechococcus sp. RS9917 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative twin-arginine translocation protein TatB
13_1_40cm_4_scaffold_8786_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9808..10596)
DNA (789bp) protein (263aa)
phosphotransferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Probable phosphotransferase id=1884917 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus sp. oral taxon 786 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HAD-superfamily hydrolase
13_1_40cm_4_scaffold_8786_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10602..11531)
DNA (930bp) protein (310aa)
glycogen synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycogen synthase id=1884913 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycogen synthase
13_1_40cm_4_scaffold_8786_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11740..13119)
DNA (1380bp) protein (460aa)
sigma-54 dependent DNA-binding response regulator; K07713 two-component system, NtrC family, response regulator HydG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=1884909 bin=GWA2_Methylomirabilis_73_35 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator
13_1_40cm_4_scaffold_8786_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(13112..14410)
DNA (1299bp) protein (433aa)
integral membrane sensor signal transduction histidine kinase Tax=GWC2_Rokubacteria_70_16_curated
Integral membrane sensor signal transduction histidine kinase id=3014939 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
integral membrane sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_8786_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14436..15026)
DNA (591bp) protein (197aa)
membrane-associated protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
SNARE associated Golgi protein-like protein id=2913053 bin=GWC2_Methylomirabilis_70_16 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
membrane-associated protein
Displaying 14 items

View Taxonomy