ggKbase home page

13_1_20cm_4_scaffold_187

Search features with annotation key words

Displaying items 1-30 of 39 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_187_1
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1259)
DNA (1257bp) protein (419aa)
hypothetical protein Tax=GWB2_Deltaproteobacteria_55_19_curated
Uncharacterized protein id=2188944 bin=GWB2_Proteobacteria_55_19 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
hypothetical protein
13_1_20cm_4_scaffold_187_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1342..2220
DNA (879bp) protein (293aa)
haloalkane dehalogenase; K01563 haloalkane dehalogenase [EC:3.8.1.5] Tax=GWA2_Rokubacteria_73_35_curated
Alpha/beta hydrolase fold protein id=1746149 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
haloalkane dehalogenase
13_1_20cm_4_scaffold_187_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

2232..2990
DNA (759bp) protein (253aa)
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.99.1); K00245 fumarate reductase iron-sulfur subunit [EC:1.3.99.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
succinate dehydrogenase and fumarate reductase iron-sulfur protein (EC:1.3.99.1)
Fumarate reductase iron-sulfur subunit id=3740911 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_187_4
unknown

Not on your lists

comp(2896..3153)
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_20cm_4_scaffold_187_5
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(3150..3599)
DNA (450bp) protein (150aa)
Thiol:disulfide interchange protein DsbA n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SPR3_9BACT
Thiol:disulfide interchange protein DsbA {ECO:0000313|EMBL:BAL58149.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
DSBA oxidoreductase
13_1_20cm_4_scaffold_187_6
unknown

Not on your lists

3655..3801
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_20cm_4_scaffold_187_7
unknown

Not on your lists

3798..4205
DNA (408bp) protein (136aa)

This feature has no annotations

13_1_20cm_4_scaffold_187_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4299..4970
DNA (672bp) protein (224aa)
acnA; aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
acnA; aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase id=3986857 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_187_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4936..6471
DNA (1536bp) protein (512aa)
acnA; aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
acnA; aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase id=3986857 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_187_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6471..7802
DNA (1332bp) protein (444aa)
icd; isocitrate dehydrogenase (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
icd; isocitrate dehydrogenase (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] id=3986855 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_187_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7760..8551
DNA (792bp) protein (264aa)
malate dehydrogenase, NAD-dependent; K00024 malate dehydrogenase [EC:1.1.1.37] Tax=GWA2_Rokubacteria_70_23_curated
mdh; malate dehydrogenase (EC:1.1.1.37)
Malate dehydrogenase id=3859633 bin=GWF2_Methylomirabilis_70_14 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_187_12
RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8702..9178
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000360F552
hypothetical protein Tax=RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated
glyoxalase/bleomycin resistance protein/dioxygenase
13_1_20cm_4_scaffold_187_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9184..10026
DNA (843bp) protein (281aa)
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2); K01677 fumarate hydratase subunit alpha [EC:4.2.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2); K01677 fumarate hydratase subunit alpha [EC:4.2.1.2] id=14626419 bin=bin7_NC10_sister species=Desulfurobacterium sp. TC5-1 genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin7_NC10_sister organism_group=NC10
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (EC:4.2.1.2)
13_1_20cm_4_scaffold_187_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

10031..10609
DNA (579bp) protein (193aa)
fumX; C-terminal fumarate hydratase, class I; K01678 fumarate hydratase subunit beta [EC:4.2.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
fumX; C-terminal fumarate hydratase, class I; K01678 fumarate hydratase subunit beta [EC:4.2.1.2] id=14626420 bin=bin7_NC10_sister species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
fumarate hydratase, class I
13_1_20cm_4_scaffold_187_15
CSP1_5_NC10, NC10, Bacteria

Not on your lists

10606..11412
DNA (807bp) protein (269aa)
succinate dehydrogenase (membrane anchor subunit) (succinic dehydrogenase) (EC:1.3.99.1)
integral membrane protein Tax=CSP1_5_NC10
integral membrane protein id=14430249 bin=bin3_NC10 species=Streptomyces sp. BoleA5 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
13_1_20cm_4_scaffold_187_16
CSP1_5_NC10, NC10, Bacteria

Not on your lists

11412..13211
DNA (1800bp) protein (600aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] Tax=CSP1_5_NC10
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] id=14430250 bin=bin3_NC10 species=Acidothermus cellulolyticus genus=Acidothermus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
sdhA; Succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
13_1_20cm_4_scaffold_187_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

13211..13966
DNA (756bp) protein (252aa)
fumarate reductase iron-sulfur subunit (EC:1.3.5.1); K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1] Tax=GWA2_Rokubacteria_70_23_curated
Succinate dehydrogenase subunit B (EC:1.3.5.1)
Succinate dehydrogenase subunit B id=4737577 bin=GWC2_Methylomirabilis_70_24 species=Nocardioides sp. genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_187_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13963..15129
DNA (1167bp) protein (389aa)
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] Tax=GWA2_Rokubacteria_73_35_curated
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5); K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] id=14430255 bin=bin3_NC10 species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin3_NC10 organism_group=NC10
sucC; succinyl-CoA synthetase subunit beta
13_1_20cm_4_scaffold_187_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15263..16135
DNA (873bp) protein (291aa)
succinyl-CoA synthetase, alpha subunit; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] Tax=GWA2_Rokubacteria_73_35_curated
Succinyl-CoA ligase [ADP-forming] subunit alpha id=2259377 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
succinyl-CoA synthetase, alpha subunit
13_1_20cm_4_scaffold_187_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16132..16560
DNA (429bp) protein (143aa)
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Nucleoside diphosphate kinase id=4681019 bin=GWC2_Methylomirabilis_70_16 species=Acidithiobacillus caldus genus=Acidithiobacillus taxon_order=Acidithiobacillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
nucleoside diphosphate kinase family protein
13_1_20cm_4_scaffold_187_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16632..17051
DNA (420bp) protein (140aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=2259376 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_187_22
unknown

Not on your lists

17203..17484
DNA (282bp) protein (94aa)

This feature has no annotations

13_1_20cm_4_scaffold_187_23
CSP1_5_NC10, NC10, Bacteria

Not on your lists

17520..17732
DNA (213bp) protein (71aa)
Uncharacterized protein Tax=CSP1_5_NC10
hypothetical protein
Uncharacterized protein id=14429133 bin=bin3_NC10 species=Clostridium sp. CAG:768 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
13_1_20cm_4_scaffold_187_24
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(17710..20544)
DNA (2835bp) protein (945aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Putative uncharacterized protein id=3354012 bin=GWC2_Methylomirabilis_70_24 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
hypothetical protein
13_1_20cm_4_scaffold_187_25
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

20576..21655
DNA (1080bp) protein (360aa)
malate dehydrogenase; K05884 (R)-2-hydroxyacid dehydrogenase [EC:1.1.1.272] Tax=CSP1_6_Rokubacteria
malate dehydrogenase; K05884 (R)-2-hydroxyacid dehydrogenase [EC:1.1.1.272] id=14626403 bin=bin7_NC10_sister species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_1_20cm_4_scaffold_187_26
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

21730..21972
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00036E6140
Glyoxalase {ECO:0000313|EMBL:KGO85204.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2
glyoxalase
13_1_20cm_4_scaffold_187_27
GWA1_OP11_48_10_plus, Microgenomates, Bacteria

Not on your lists

22085..22471
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QWP4_9RHOB
Nuclear protein SET Tax=GWA1_OP11_48_10_plus
hypothetical protein
13_1_20cm_4_scaffold_187_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22544..22987
DNA (444bp) protein (148aa)
Ring-cleavage extradiol dioxygenase n=1 Tax=Mycobacterium fortuitum subsp. fortuitum DSM 46621 RepID=K0V491_MYCFO
dioxygenase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
13_1_20cm_4_scaffold_187_29
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

23027..23650
DNA (624bp) protein (208aa)
CMP/dCMP deaminase, zinc-binding n=1 Tax=Roseiflexus sp. (strain RS-1) RepID=A5UW74_ROSS1
CMP/dCMP deaminase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
CMP/dCMP deaminase zinc-binding protein
13_1_20cm_4_scaffold_187_30
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23653..24483)
DNA (831bp) protein (277aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YX93_9RHIZ
Binding-protein-dependent transport system inner membrane component {ECO:0000313|EMBL:EMS44715.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae
binding-protein-dependent transport systems inner membrane component
Displaying items 1-30 of 39 in total

View Taxonomy