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13_1_20cm_4_scaffold_2250

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Displaying items 1-30 of 31 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2250_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..1657)
DNA (1656bp) protein (552aa)
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53) id=14625663 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53)
13_1_20cm_4_scaffold_2250_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1698..2093)
DNA (396bp) protein (132aa)
transcriptional regulator; K13640 MerR family transcriptional regulator, heat shock protein HspR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator id=3544313 bin=GWA2_Methylomirabilis_73_35 species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_1_20cm_4_scaffold_2250_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2090..2986)
DNA (897bp) protein (299aa)
Zn finger domain-containing DnaJ-class molecular chaperone; K03686 molecular chaperone DnaJ Tax=GWA2_Rokubacteria_73_35_curated
DnaJ-class molecular chaperone with C-terminal Zn finger domain id=3544317 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DnaJ-class molecular chaperone with C-terminal Zn finger domain
13_1_20cm_4_scaffold_2250_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2996..4915)
DNA (1920bp) protein (640aa)
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) id=14625666 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)
13_1_20cm_4_scaffold_2250_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4985..5449)
DNA (465bp) protein (155aa)
Heat shock protein Hsp20 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Heat shock protein Hsp20 id=4311462 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HspC2 heat shock protein
13_1_20cm_4_scaffold_2250_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5704..6252
DNA (549bp) protein (183aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4311463 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_2250_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6624..7430
DNA (807bp) protein (269aa)
protein mazG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein mazG id=4311465 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MazG family protein
13_1_20cm_4_scaffold_2250_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7433..7969
DNA (537bp) protein (179aa)
phosphatase Tax=GWA2_Rokubacteria_73_35_curated
Predicted phosphatase id=4311466 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Appr-1-p processing protein
13_1_20cm_4_scaffold_2250_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7979..9223
DNA (1245bp) protein (415aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type II secretion system protein E id=4311467 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type IV-A pilus assembly ATPase PilB
13_1_20cm_4_scaffold_2250_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9223..9582
DNA (360bp) protein (120aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type IV-A pilus assembly ATPase PilB id=3773045 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
type IV pilus assembly protein PilB
13_1_20cm_4_scaffold_2250_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9619..10455
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI000365F68D rbh
Putative substrate binding periplasmic component of ABC transporter {ECO:0000313|EMBL:CAK10298.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizo
ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_2250_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10463..11116
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI000361A403
Putative ABC transporter permease component {ECO:0000313|EMBL:CAK10297.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group
ABC transporter permease
13_1_20cm_4_scaffold_2250_13
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11131..11898
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00036D5270 rbh
Glutamine ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAD40047.1}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbi
glutamine ABC transporter ATP-binding protein
13_1_20cm_4_scaffold_2250_14
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12742..13140
DNA (399bp) protein (133aa)
putative hydrolase (EC:3.8.1.-)
Uncharacterized protein n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4RGV0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESR25371.1}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense A
13_1_20cm_4_scaffold_2250_15
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(13137..14705)
DNA (1569bp) protein (523aa)
adenylate/guanylate cyclase Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
adenylate/guanylate cyclase id=14625653 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
adenylate/guanylate cyclase
13_1_20cm_4_scaffold_2250_16
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(14702..16183)
DNA (1482bp) protein (494aa)
adenylate/guanylate cyclase Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
adenylate/guanylate cyclase id=14625653 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
adenylate/guanylate cyclase
13_1_20cm_4_scaffold_2250_17
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

Not on your lists

16615..17490
DNA (876bp) protein (292aa)
Metal dependent phosphohydrolase id=3692798 bin=GWF2_Lentisphaerae_57_35 species=Desulfohalobium retbaense genus=Desulfohalobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
metal dependent phosphohydrolase
Tax=BJP_IG2158_Zixibacteria_48_33
13_1_20cm_4_scaffold_2250_18
unknown

Not on your lists

17536..17682
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_20cm_4_scaffold_2250_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

17675..19417
DNA (1743bp) protein (581aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=GWC2_Rokubacteria_70_16_curated
Amidase id=3014927 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidase
13_1_20cm_4_scaffold_2250_20
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(19414..20235)
DNA (822bp) protein (274aa)
amidohydrolase 2 Tax=CSP1_6_Rokubacteria
amidohydrolase 2 id=14627726 bin=bin7_NC10_sister species=Ruegeria conchae genus=Ruegeria taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
amidohydrolase 2
13_1_20cm_4_scaffold_2250_21
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(20274..20966)
DNA (693bp) protein (231aa)
methylated-DNA--protein-cysteine methyltransferase Tax=CSP1_6_Rokubacteria
methylated-DNA--protein-cysteine methyltransferase id=14626944 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
methylated-DNA--protein-cysteine methyltransferase
13_1_20cm_4_scaffold_2250_22
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(20971..21474)
DNA (504bp) protein (168aa)
RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=CSP1_6_Rokubacteria
RNA polymerase sigma factor SigW; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=14626943 bin=bin7_NC10_sister species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
rpoE2; RNA polymerase sigma-E factor RpoE
13_1_20cm_4_scaffold_2250_23
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21576..22772
DNA (1197bp) protein (399aa)
Twin-arginine translocation pathway signal Tax=RBG_13_Deltaproteobacteria_52_11_curated
Oxidoreductase molybdopterin binding id=4507361 bin=GWC2_Geobacteraceae_55_20 species=Sulfurihydrogenibium azorense genus=Sulfurihydrogenibium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria rbh
molybdopterin binding oxidoreductase
13_1_20cm_4_scaffold_2250_24
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22783..23091
DNA (309bp) protein (103aa)
putative sulfite:cytochrome c oxidoreductase subunit B Tax=RBG_13_Deltaproteobacteria_52_11_curated
Sulfite:cytochrome c oxidoreductase subunit B id=2992366 bin=GWF2_Geobacter_54_21 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
sulfite:cytochrome C oxidoreductase subunit B
13_1_20cm_4_scaffold_2250_25
CG_Delta_02, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23106..23534)
DNA (429bp) protein (143aa)
Large-conductance mechanosensitive channel n=2 Tax=Geobacter sulfurreducens RepID=MSCL_GEOSL
Large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel Tax=CG_Delta_02
mechanosensitive ion channel protein MscL
13_1_20cm_4_scaffold_2250_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23528..25849)
DNA (2322bp) protein (774aa)
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
xanthine dehydrogenase, molybdenum binding subunit apoprotein (EC:1.17.1.4)
Xanthine dehydrogenase, molybdenum binding subunit apoprotein id=3162221 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_2250_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25919..26842
DNA (924bp) protein (308aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2995738 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NHL repeat family protein
13_1_20cm_4_scaffold_2250_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

26839..27315
DNA (477bp) protein (159aa)
Thioesterase superfamily n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QMN8_9BRAD
thioesterase superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thioesterase superfamily protein
13_1_20cm_4_scaffold_2250_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27327..27977)
DNA (651bp) protein (217aa)
murein transglycosylase (EC:3.2.1.1)
Soluble lytic murein transglycosylase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Soluble lytic murein transglycosylase-like protein id=4894272 bin=GWA2_Methylomirabilis_73_35 species=Selenomonas ruminantium genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_2250_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(28164..28403)
DNA (240bp) protein (80aa)
cytoplasmic protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4894273 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytoplasmic protein
Displaying items 1-30 of 31 in total

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