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13_1_20cm_4_scaffold_233

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Displaying items 1-30 of 32 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_233_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

144..362
DNA (219bp) protein (73aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3779689 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_233_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

495..995
DNA (501bp) protein (167aa)
cyclic nucleotide-binding domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Crp/Fnr family transcriptional regulator id=14625479 bin=bin7_NC10_sister species=Nocardioides sp. CF8 genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
cyclic nucleotide-binding domain-containing protein
13_1_20cm_4_scaffold_233_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1122..2090
DNA (969bp) protein (323aa)
cyclic nucleotide-binding protein Tax=GWA2_Rokubacteria_73_35_curated
cyclic nucleotide-binding protein id=14625478 bin=bin7_NC10_sister species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_233_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2100..3383)
DNA (1284bp) protein (428aa)
Uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=3779679 bin=GWA2_Methylomirabilis_73_35 species=Zea mays genus=Zea taxon_order=Poales taxon_class=Liliopsida phylum=Streptophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_233_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3408..4823
DNA (1416bp) protein (472aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=14625475 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10 rbh
amidase
13_1_20cm_4_scaffold_233_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4910..5584
DNA (675bp) protein (225aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3779673 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_233_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5792..6808
DNA (1017bp) protein (339aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54) id=14628036 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
aroG-2; 3-deoxy-7-phosphoheptulonate synthase
13_1_20cm_4_scaffold_233_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6838..7743
DNA (906bp) protein (302aa)
OmpA/MotB protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
TonB family protein id=3919666 bin=GWF2_Methylomirabilis_70_14 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpA/MotB
13_1_20cm_4_scaffold_233_trna_1
unknown

Not on your lists

7832..7903
DNA (72bp)
transferRNA
13_1_20cm_4_scaffold_233_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7929..9722
DNA (1794bp) protein (598aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=GWA2_Rokubacteria_70_23_curated
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase id=4825373 bin=GWC2_Methylomirabilis_70_24 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
13_1_20cm_4_scaffold_233_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9851..10321
DNA (471bp) protein (157aa)
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Translation initiation factor IF-3 id=3919664 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation factor IF-3
13_1_20cm_4_scaffold_233_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


10340..10537
DNA (198bp) protein (66aa)
LSU ribosomal protein L35P Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L35 id=3919663 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Megamonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmI; 50S ribosomal protein L35
13_1_20cm_4_scaffold_233_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


10554..10910
DNA (357bp) protein (119aa)
rplT; 50S ribosomal protein L20 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L20 id=3919662 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplT; 50S ribosomal protein L20
13_1_20cm_4_scaffold_233_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


10913..11944
DNA (1032bp) protein (344aa)
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] id=14627867 bin=bin7_NC10_sister species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
pheS; phenylalanyl-tRNA synthetase subunit alpha
13_1_20cm_4_scaffold_233_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11941..14370
DNA (2430bp) protein (810aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] id=14627866 bin=bin7_NC10_sister species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
phenylalanyl-tRNA synthetase subunit beta
13_1_20cm_4_scaffold_233_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14370..14564
DNA (195bp) protein (65aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_4_scaffold_233_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14557..14844
DNA (288bp) protein (96aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4039893 bin=GWC2_Methylomirabilis_70_24 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_233_17
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14858..15229
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Chitiniphilus shinanonensis RepID=UPI0003661AC3
Uncharacterized protein {ECO:0000313|EMBL:EKU83497.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG
glyoxalase/bleomycin resistance protein/dioxygenase
13_1_20cm_4_scaffold_233_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15529..17088
DNA (1560bp) protein (520aa)
ymdA; 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC:3.1.4.16); K06950 uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ymdA; 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC:3.1.4.16)
Ribonuclease Y id=4039892 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
13_1_20cm_4_scaffold_233_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17094..17870
DNA (777bp) protein (259aa)
metallophosphoesterase; K09769 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Metallophosphoesterase id=3975805 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_233_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17887..18738
DNA (852bp) protein (284aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] Tax=RIFCSPLOWO2_12_FULL_Roku
Bifunctional protein FolD id=4039890 bin=GWC2_Methylomirabilis_70_24 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase
13_1_20cm_4_scaffold_233_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18735..20024
DNA (1290bp) protein (430aa)
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] Tax=GWA2_Rokubacteria_73_35_curated
exodeoxyribonuclease VII large subunit; K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] id=14627995 bin=bin7_NC10_sister species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
exodeoxyribonuclease VII large subunit
13_1_20cm_4_scaffold_233_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20005..20244
DNA (240bp) protein (80aa)
exodeoxyribonuclease VII, small subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Exodeoxyribonuclease 7 small subunit id=3975799 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
exodeoxyribonuclease VII small subunit
13_1_20cm_4_scaffold_233_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20241..21137
DNA (897bp) protein (299aa)
ispA; geranylgeranyl pyrophosphate synthase; K13789 geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Polyprenyl synthetase id=3975797 bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
trans-isoprenyl diphosphate synthase
13_1_20cm_4_scaffold_233_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21139..22428
DNA (1290bp) protein (430aa)
phosphopyruvate hydratase; K01689 enolase [EC:4.2.1.11] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
enolase (EC:4.2.1.11)
Enolase id=3975795 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_233_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22425..22739
DNA (315bp) protein (105aa)
septum formation initiator; K13052 cell division protein DivIC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Septum formation initiator family protein id=3975793 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
septum formation initiator
13_1_20cm_4_scaffold_233_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22751..24919
DNA (2169bp) protein (723aa)
Glycosyl transferase, group 2 family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glycosyl transferase, group 2 family protein id=3975791 bin=GWA2_Methylomirabilis_73_35 species=Labrenzia alexandrii genus=Labrenzia taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alpha/beta hydrolase fold protein
13_1_20cm_4_scaffold_233_27
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(24904..25893)
DNA (990bp) protein (330aa)
quaternary amine uptake ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
quaternary amine uptake ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein id=14627586 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
quaternary amine uptake ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_233_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25926..26141)
DNA (216bp) protein (72aa)
putative aromatic-ring-hydroxylating dioxygenase, beta subunit Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
13_1_20cm_4_scaffold_233_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26138..26284)
DNA (147bp) protein (49aa)
putative aromatic-ring-hydroxylating dioxygenase, beta subunit Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Displaying items 1-30 of 32 in total

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