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13_1_20cm_4_scaffold_281

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_281_1
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(2..445)
DNA (444bp) protein (148aa)
Lactam utilization-like protein (lamB); K07160 UPF0271 protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Lactam utilization-like protein (lamB); K07160 UPF0271 protein id=14628095 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_281_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(457..1782)
DNA (1326bp) protein (442aa)
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] id=14628094 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10 rbh
glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8)
13_1_20cm_4_scaffold_281_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1793..3331)
DNA (1539bp) protein (513aa)
putative regulatory protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Allophanate hydrolase subunit 2 id=4669076 bin=GWF2_Methylomirabilis_70_14 species=Clostridium sp. MSTE9 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
allophanate hydrolase
13_1_20cm_4_scaffold_281_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3477..4265)
DNA (789bp) protein (263aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4213630 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_20cm_4_scaffold_281_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4550..5554)
DNA (1005bp) protein (335aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
D-3-phosphoglycerate dehydrogenase id=4213632 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-3-phosphoglycerate dehydrogenase
13_1_20cm_4_scaffold_281_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5589..6338)
DNA (750bp) protein (250aa)
putative methyltransferase type 11 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase id=4213634 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative methyltransferase type 11
13_1_20cm_4_scaffold_281_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6387..6596
DNA (210bp) protein (70aa)
NAD-dependent epimerase/dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NAD-dependent epimerase/dehydratase id=4213636 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_281_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6593..7090
DNA (498bp) protein (166aa)
N-acetyltransferase GCN5; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183] Tax=GWA2_Rokubacteria_73_35_curated
Transcriptional regulator, ArsR family id=4213638 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
N-acetyltransferase GCN5
13_1_20cm_4_scaffold_281_9
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

7189..8373
DNA (1185bp) protein (395aa)
Receptor family ligand binding region n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WTM4_9SYNE rbh
Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1 Tax=RBG_16_NC10_65_8_curated
ethanolamine utilization protein EutN
13_1_20cm_4_scaffold_281_10
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

8425..9294
DNA (870bp) protein (290aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9FJY1_9CYAN rbh
Amino acid/amide ABC transporter membrane protein 1, HAAT family {ECO:0000313|EMBL:EKV03168.1}; Flags: Precursor;; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales
inner-membrane translocator
13_1_20cm_4_scaffold_281_11
unknown

Not on your lists

comp(9461..10114)
DNA (654bp) protein (218aa)

This feature has no annotations

13_1_20cm_4_scaffold_281_12
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10641..11732
DNA (1092bp) protein (364aa)
ABC transporter related protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y760_9RHIZ
ABC transporter related protein {ECO:0000313|EMBL:EMS42671.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methyl
ABC transporter
13_1_20cm_4_scaffold_281_13
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11738..12532
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3WZF6_RHIFR
hypothetical protein
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
13_1_20cm_4_scaffold_281_14
Streptomyces pristinaespiralis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12525..13007)
DNA (483bp) protein (161aa)
Predicted protein n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=D6XA12_STRPR
Predicted protein {ECO:0000313|EMBL:EFH30894.1}; TaxID=457429 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces pristinaespiralis ATCC 25486.
hypothetical protein
13_1_20cm_4_scaffold_281_15
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13004..14785)
DNA (1782bp) protein (594aa)
glycosyl hydrolase n=1 Tax=Saccharopolyspora spinosa RepID=UPI0002379AC6 rbh
Glycosyl hydrolase {ECO:0000313|EMBL:EWT05418.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
glycosyl hydrolase
13_1_20cm_4_scaffold_281_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(14863..15882)
DNA (1020bp) protein (340aa)
alcohol dehydrogenase GroES-like protein Tax=CSP1_6_Rokubacteria
alcohol dehydrogenase GroES-like protein id=14627896 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
alcohol dehydrogenase GroES-like protein
13_1_20cm_4_scaffold_281_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15887..17116)
DNA (1230bp) protein (410aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2868867 bin=GWC2_Methylomirabilis_70_24 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_20cm_4_scaffold_281_18
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

17177..17929
DNA (753bp) protein (251aa)
tetratricopeptide TPR_2 repeat protein; K05807 putative lipoprotein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein; K05807 putative lipoprotein id=14627446 bin=bin7_NC10_sister species=Thalassiobium sp. R2A62 genus=Thalassobium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative lipoprotein
13_1_20cm_4_scaffold_281_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17952..19007
DNA (1056bp) protein (352aa)
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] id=14627445 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
threonine aldolase
13_1_20cm_4_scaffold_281_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19016..19993
DNA (978bp) protein (326aa)
oppD; peptide ABC transporter ATP-binding protein (EC:3.6.3.24); K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
oppD; peptide ABC transporter ATP-binding protein (EC:3.6.3.24)
Peptide ABC transporter ATP-binding protein id=3311241 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_281_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20005..20991
DNA (987bp) protein (329aa)
oppF; oligopeptide ABC transporter ATP-binding protein (EC:3.6.3.27); K02032 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
oppF; peptide ABC transporter ATP-binding protein (EC:3.6.3.27)
peptide ABC transporter ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein id=14627442 bin=bin7_NC10_sister species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_281_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21251..22036
DNA (786bp) protein (262aa)
alpha/beta fold family hydrolase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
esterase/lipase id=14627440 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
putative hydrolase or acyltransferase of alpha/beta superfamily
13_1_20cm_4_scaffold_281_23
unknown

Not on your lists

comp(22017..22268)
DNA (252bp) protein (84aa)

This feature has no annotations

13_1_20cm_4_scaffold_281_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22336..23346)
DNA (1011bp) protein (337aa)
peptidase M23B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
peptidase M23 id=14627438 bin=bin7_NC10_sister species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
M23 peptidase domain-containing protein
13_1_20cm_4_scaffold_281_25
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

23581..24750
DNA (1170bp) protein (390aa)
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1) Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1) id=14627617 bin=bin7_NC10_sister species=Thioalkalivibrio sp. ALSr1 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1)
13_1_20cm_4_scaffold_281_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24761..26068
DNA (1308bp) protein (436aa)
hom; homoserine dehydrogenase (EC:1.1.1.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
homoserine dehydrogenase (HDH): ThrA, MetL (EC:1.1.1.3); K00003 homoserine dehydrogenase [EC:1.1.1.3] id=14627618 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hom; homoserine dehydrogenase (EC:1.1.1.3)
13_1_20cm_4_scaffold_281_27
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

26065..27123
DNA (1059bp) protein (353aa)
thrC_2; threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
L-threonine synthase (EC:4.2.3.1) id=14627619 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10 rbh
thrC_2; threonine synthase (EC:4.2.3.1)
13_1_20cm_4_scaffold_281_28
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

27143..28129
DNA (987bp) protein (329aa)
membrane protein; K07027 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=2513752 bin=GWC2_Methylomirabilis_70_24 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Displaying 28 items

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