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13_1_20cm_4_scaffold_438

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_438_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1..336
DNA (336bp) protein (112aa)
lpxD; UDP-3-O-acylglucosamine N-acyltransferase (EC:2.3.1.-)
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase Tax=GWC2_Rokubacteria_70_16_curated
UDP-3-O-acylglucosamine N-acyltransferase id=2875198 bin=GWC2_Methylomirabilis_70_16 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_438_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

329..1174
DNA (846bp) protein (282aa)
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129); K00677 UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UDP-3-O-acylglucosamine N-acyltransferase id=3956967 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase
13_1_20cm_4_scaffold_438_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1171..2202
DNA (1032bp) protein (344aa)
oxidoreductase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxidoreductase domain protein id=3956964 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase domain-containing protein
13_1_20cm_4_scaffold_438_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2986..4077
DNA (1092bp) protein (364aa)
lpxB; Lipid-A-disaccharide synthase (EC:2.4.1.182) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Lipid-A-disaccharide synthase id=3956956 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipid-A-disaccharide synthase
13_1_20cm_4_scaffold_438_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4080..4736
DNA (657bp) protein (219aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4000034 bin=GWF2_Methylomirabilis_70_14 species=Magnetospirillum gryphiswaldense genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_438_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4733..6007
DNA (1275bp) protein (425aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-)
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) id=3956951 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_438_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6004..7101
DNA (1098bp) protein (366aa)
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lpxK; Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase) (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase id=3956947 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_438_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7086..8093
DNA (1008bp) protein (336aa)
ADP-heptose--LPS heptosyltransferase II (EC:2.-.-.-) Tax=GWA2_Rokubacteria_73_35_curated
ADP-heptose--LPS heptosyltransferase II (Modular protein) id=3956942 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipopolysaccharide heptosyltransferase II
13_1_20cm_4_scaffold_438_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8090..9202
DNA (1113bp) protein (371aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glycosyl transferase group 1 id=3956940 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_20cm_4_scaffold_438_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9199..10347
DNA (1149bp) protein (383aa)
putative phosphatidylinositol alpha-mannosyltransferase (EC:2.4.1.57)
glycosyltransferase Tax=GWA2_Rokubacteria_73_35_curated
Putative Phosphatidylinositol alpha-mannosyltransferase id=3956937 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_438_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10391..11428
DNA (1038bp) protein (346aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase, group 1 id=3956935 bin=GWA2_Methylomirabilis_73_35 species=Oscillatoria sp. PCC 6506 genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Glycosyl transferase, group 1
13_1_20cm_4_scaffold_438_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11425..12531
DNA (1107bp) protein (369aa)
group 1 glycosyl transferase; K02844 UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=3956931 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_20cm_4_scaffold_438_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12539..13144
DNA (606bp) protein (202aa)
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-); K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] Tax=RIFCSPLOWO2_02_FULL_Rok
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-)
D,D-heptose 1,7-bisphosphate phosphatase id=3956928 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_438_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13141..14139
DNA (999bp) protein (333aa)
D-beta-D-heptose 7-phosphate kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PfkB domain protein id=4143312 bin=GWF2_Methylomirabilis_70_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-beta-D-heptose 7-phosphate kinase
13_1_20cm_4_scaffold_438_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14174..14638
DNA (465bp) protein (155aa)
cytidyltransferase-related domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cytidyltransferase-related domain protein id=3333947 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytidyltransferase-related domain-containing protein
13_1_20cm_4_scaffold_438_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14635..15636
DNA (1002bp) protein (334aa)
ADP-heptose--LPS heptosyltransferase; K02841 heptosyltransferase I [EC:2.4.-.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ADP-heptose:LPS heptosyltransferase id=4941210 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ADP-heptose--LPS heptosyltransferase
13_1_20cm_4_scaffold_438_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16067..16252
DNA (186bp) protein (62aa)
glycosyl transferase family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glycosyl transferase family 2 id=3333943 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_438_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

16249..17235
DNA (987bp) protein (329aa)
trpS; tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) (EC:6.1.1.2) Tax=GWA2_Rokubacteria_70_23_curated
trpS; tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS) id=4430919 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_438_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17232..18053
DNA (822bp) protein (274aa)
chromosome segregation and condensation protein ScpA; K05896 segregation and condensation protein A Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=3333777 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
segregation and condensation protein A
13_1_20cm_4_scaffold_438_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17992..18639
DNA (648bp) protein (216aa)
scpB; Segregation and condensation protein B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Segregation and condensation protein B id=3333773 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
scpB; Segregation and condensation protein B
13_1_20cm_4_scaffold_438_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(18623..19174)
DNA (552bp) protein (184aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_20cm_4_scaffold_438_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19388..20449
DNA (1062bp) protein (354aa)
pheA; chorismate mutase/prephenate dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chorismate mutase/prephenate dehydratase id=3333763 bin=GWA2_Methylomirabilis_73_35 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
prephenate dehydratase
13_1_20cm_4_scaffold_438_23
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

20459..21571
DNA (1113bp) protein (371aa)
hisC; histidinol-phosphate aminotransferase (EC:2.6.1.9) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] id=14627229 bin=bin7_NC10_sister species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
histidinol-phosphate aminotransferase
13_1_20cm_4_scaffold_438_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21568..22419
DNA (852bp) protein (284aa)
prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12] id=14627230 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
prephenate dehydrogenase (EC:1.3.1.12)
13_1_20cm_4_scaffold_438_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22416..23762
DNA (1347bp) protein (449aa)
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-phosphoshikimate 1-carboxyvinyltransferase; K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] id=14627231 bin=bin7_NC10_sister species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
3-phosphoshikimate 1-carboxyvinyltransferase
13_1_20cm_4_scaffold_438_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

23759..24433
DNA (675bp) protein (225aa)
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=GWA2_Rokubacteria_70_23_curated
cytidylate kinase (EC:2.7.4.14)
Cytidylate kinase id=4430859 bin=GWC2_Methylomirabilis_70_24 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_438_27
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

24415..25110
DNA (696bp) protein (232aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase Tax=CSP1_6_Rokubacteria
1-acyl-sn-glycerol-3-phosphate acyltransferase id=14627233 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
1-acyl-sn-glycerol-3-phosphate acyltransferase
13_1_20cm_4_scaffold_438_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


25097..26812
DNA (1716bp) protein (572aa)
rpsA; 30S ribosomal protein S1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S1 id=4941223 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpsA; 30S ribosomal protein S1
13_1_20cm_4_scaffold_438_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26821..27717
DNA (897bp) protein (299aa)
Signal peptide peptidase SppA, 36K type (EC:3.1.3.26) Tax=GWA2_Rokubacteria_73_35_curated
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-] id=14627235 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-)
Displaying 29 items

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