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13_1_20cm_4_scaffold_474

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Displaying 30 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_474_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1..1014)
DNA (1014bp) protein (338aa)
GTPase or GTP-binding protein; K06947 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
GTPase or GTP-binding protein; K06947 id=14627508 bin=bin7_NC10_sister species=Methanopyrus kandleri genus=Methanopyrus taxon_order=Methanopyrales taxon_class=Methanopyri phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10 rbh
GTPase or GTP-binding protein-like protein
13_1_20cm_4_scaffold_474_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1011..2216)
DNA (1206bp) protein (402aa)
aspartate aminotransferase (EC:2.6.1.1); K00812 aspartate aminotransferase [EC:2.6.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
aspartate aminotransferase (EC:2.6.1.1)
Aspartate aminotransferase A (AspAT) id=4834180 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_474_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2234..2731)
DNA (498bp) protein (166aa)
pantetheine-phosphate adenylyltransferase; K00954 pantetheine-phosphate adenylyltransferase [EC:2.7.7.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Phosphopantetheine adenylyltransferase id=3362963 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphopantetheine adenylyltransferase
13_1_20cm_4_scaffold_474_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3281..4252)
DNA (972bp) protein (324aa)
recG; ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATP-dependent DNA helicase RecG id=3362965 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
recG; ATP-dependent DNA helicase RecG
13_1_20cm_4_scaffold_474_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


5294..5485
DNA (192bp) protein (64aa)
50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L28 id=3362966 bin=GWA2_Methylomirabilis_73_35 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L28
13_1_20cm_4_scaffold_474_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5742..6791)
DNA (1050bp) protein (350aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14627009 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_474_7
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6965..7771)
DNA (807bp) protein (269aa)
bacteriocin n=1 Tax=Humibacter albus RepID=UPI0003B40ADC
Bacteriocin {ECO:0000313|EMBL:KFI30232.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.
Linocin_M18 bacteriocin protein
13_1_20cm_4_scaffold_474_8
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7768..8154)
DNA (387bp) protein (129aa)
ferritin n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B5E026
Uncharacterized protein {ECO:0000313|EMBL:ABC21774.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillu
hypothetical protein
13_1_20cm_4_scaffold_474_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8223..8597)
DNA (375bp) protein (125aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4319695 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_474_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8629..10776)
DNA (2148bp) protein (716aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
relA; GTP pyrophosphokinase (EC:2.7.6.5) id=14627007 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
relA; GTP pyrophosphokinase (EC:2.7.6.5)
13_1_20cm_4_scaffold_474_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10820..11761)
DNA (942bp) protein (314aa)
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF id=14627006 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
secF; preprotein translocase subunit SecF
13_1_20cm_4_scaffold_474_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11758..13314)
DNA (1557bp) protein (519aa)
protein translocase subunit; K03072 preprotein translocase subunit SecD Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
protein translocase subunit; K03072 preprotein translocase subunit SecD id=14627005 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
protein translocase subunit
13_1_20cm_4_scaffold_474_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13375..13476)
DNA (102bp) protein (34aa)
yajC; Preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC Tax=GWA2_Rokubacteria_73_35_curated
13_1_20cm_4_scaffold_474_14
unknown

Not on your lists

13787..14161
DNA (375bp) protein (125aa)

This feature has no annotations

13_1_20cm_4_scaffold_474_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14247..14942
DNA (696bp) protein (232aa)
extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC-type branched-chain amino acid transport system, periplasmic component id=4288064 bin=GWF2_Methylomirabilis_70_14 species=Idiomarina sp. A28L genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular ligand-binding receptor
13_1_20cm_4_scaffold_474_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

14900..15415
DNA (516bp) protein (172aa)
livK; branched-chain amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC-type branched-chain amino acid transport system, periplasmic component id=3209650 bin=GWC2_Methylomirabilis_70_24 species=Idiomarina sp. A28L genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
branched-chain amino acid ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_474_17
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15504..16247
DNA (744bp) protein (248aa)
Putative Asp/Glu/Hydantoin racemase n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HD65_ACTM4 rbh
Putative Asp/Glu/Hydantoin racemase {ECO:0000313|EMBL:BAL90952.1}; TaxID=512565 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missourie
putative Asp/Glu/Hydantoin racemase
13_1_20cm_4_scaffold_474_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16244..17371)
DNA (1128bp) protein (376aa)
tgt; tRNA-guanine transglycosylase (queuine/archaeosine tRNA-ribosyltransferase) (EC:2.4.2.29) Tax=GWA2_Rokubacteria_73_35_curated
tgt; tRNA-guanine transglycosylase (queuine/archaeosine tRNA-ribosyltransferase) (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase id=4319701 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_474_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17385..18419)
DNA (1035bp) protein (345aa)
S-adenosylmethionine; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
S-adenosylmethionine:tRNA ribosyltransferase-isomerase id=4319702 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
S-adenosylmethionine/tRNA-ribosyltransferase-isomerase
13_1_20cm_4_scaffold_474_20
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18444..20012)
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Geobacter sp. (strain M21) RepID=C6E8S2_GEOSM
hypothetical protein Tax=GWC2_Geobacteraceae_58_44_curated
hypothetical protein
13_1_20cm_4_scaffold_474_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20064..20360)
DNA (297bp) protein (99aa)
export-related chaperone CsaA; K06878 tRNA-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Export-related chaperone CsaA id=4284345 bin=GWC2_Methylomirabilis_70_16 species=Paracoccus denitrificans genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Export-related chaperone CsaA
13_1_20cm_4_scaffold_474_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20403..21521)
DNA (1119bp) protein (373aa)
SpoIID/LytB domain-containing protein; K06381 stage II sporulation protein D Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SpoIID/LytB domain protein id=4319706 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cell division protein
13_1_20cm_4_scaffold_474_23
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21518..21733)
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GA00_GEOUR
hypothetical protein Tax=GWC2_Geobacteraceae_58_44_curated
hypothetical protein
13_1_20cm_4_scaffold_474_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21738..22805)
DNA (1068bp) protein (356aa)
ruvB; Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=GWA2_Rokubacteria_73_35_curated
ruvB; Holliday junction DNA helicase RuvB (EC:3.6.4.12)
Holliday junction ATP-dependent DNA helicase RuvB id=4319707 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_474_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22802..23455)
DNA (654bp) protein (218aa)
DNA recombination protein RuvA domain I; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=GWA2_Rokubacteria_73_35_curated
DNA recombination protein RuvA domain I; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] id=14626993 bin=bin7_NC10_sister species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
DNA recombination protein RuvA domain I
13_1_20cm_4_scaffold_474_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23463..23831)
DNA (369bp) protein (123aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
crossover junction endodeoxyribonuclease ruvC id=4319708 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_474_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23968..24717)
DNA (750bp) protein (250aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626991 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_1_20cm_4_scaffold_474_28
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(24723..25775)
DNA (1053bp) protein (351aa)
thioesterase superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Thioesterase superfamily protein id=3467151 bin=GWA2_Methylomirabilis_73_35 species=Vulcanisaeta moutnovskia genus=Vulcanisaeta taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioesterase
13_1_20cm_4_scaffold_474_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(25793..26713)
DNA (921bp) protein (307aa)
heme-binding protein A (Hemin-binding lipoprotein); K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
Heme-binding protein A (Hemin-binding lipoprotein) id=3467128 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_474_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

27480..27860
DNA (381bp) protein (127aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14627257 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Displaying 30 items

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