ggKbase home page

13_1_20cm_4_scaffold_52

Search features with annotation key words

Displaying items 1-30 of 107 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_52_1
unknown

Not on your lists

1..117
DNA (117bp) protein (39aa)

This feature has no annotations

13_1_20cm_4_scaffold_52_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(161..619)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Saccharomonospora saliphila RepID=UPI0003771CE5
conserved hypothetical protein, DUF2587 superfamily Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_20cm_4_scaffold_52_3
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(666..1211)
DNA (546bp) protein (182aa)
Putative membrane protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EG64_9CHLR
Putative membrane protein {ECO:0000313|EMBL:CCF83676.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" sour
hypothetical protein
13_1_20cm_4_scaffold_52_4
unknown

Not on your lists

comp(1226..1729)
DNA (504bp) protein (168aa)

This feature has no annotations

13_1_20cm_4_scaffold_52_5
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(1726..2292)
DNA (567bp) protein (189aa)
Transcriptional regulator, PadR family n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9XEZ4_9CHRO
Transcriptional regulator, PadR family {ECO:0000313|EMBL:AFZ31195.1}; TaxID=1173026 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;" source="Gloeocapsa sp. PCC 742
transcriptional regulator, PadR family
13_1_20cm_4_scaffold_52_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2344..2982)
DNA (639bp) protein (213aa)
rnhB; ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=GWA2_Rokubacteria_73_35_curated
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII id=4734640 bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_52_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(3000..3374)
DNA (375bp) protein (125aa)
50S ribosomal protein L19 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L19 id=3772772 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplS; 50S ribosomal protein L19
13_1_20cm_4_scaffold_52_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3396..4013)
DNA (618bp) protein (206aa)
tRNA (guanine-N1)-methyltransferase Tax=GWA2_Rokubacteria_70_23_curated
tRNA (guanine-N(1)-)-methyltransferase id=4505269 bin=GWF2_Methylomirabilis_70_14 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA (Guanine37-N(1)-) methyltransferase
13_1_20cm_4_scaffold_52_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4159..4488)
DNA (330bp) protein (110aa)
16S rRNA processing protein RimM; K02860 16S rRNA processing protein RimM Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
16S rRNA-processing protein RimM id=5019513 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Ribosome maturation factor rimM
13_1_20cm_4_scaffold_52_10
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

Not on your lists

comp(4493..4768)
DNA (276bp) protein (92aa)
UPF0109 protein NITGR_380022 n=1 Tax=Nitrospina gracilis 3/211 RepID=M1ZC03_9BACT
UPF0109 protein NITGR_380022 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1266370 species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (str
hypothetical protein
13_1_20cm_4_scaffold_52_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(4794..4982)
DNA (189bp) protein (63aa)
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S16 id=4960507 bin=GWC2_Methylomirabilis_70_24 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_20cm_4_scaffold_52_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(5044..6390)
DNA (1347bp) protein (449aa)
signal recognition particle subunit FFH/SRP54 (srp54); K03106 signal recognition particle subunit SRP54 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Signal recognition particle protein id=4505277 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
signal recognition particle subunit FFH/SRP54 (srp54)
13_1_20cm_4_scaffold_52_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6449..7099)
DNA (651bp) protein (217aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=GWA2_Rokubacteria_73_35_curated
HAD-superfamily hydrolase; K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] id=14625197 bin=bin7_NC10_sister species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
13_1_20cm_4_scaffold_52_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7096..8442)
DNA (1347bp) protein (449aa)
hypothetical protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4505282 bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_52_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8439..9185)
DNA (747bp) protein (249aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase id=5019509 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_52_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9368..9892)
DNA (525bp) protein (175aa)
formylmethionine deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptide deformylase id=3772755 bin=GWC2_Methylomirabilis_70_16 species=Alkalilimnicola ehrlichii genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptide deformylase
13_1_20cm_4_scaffold_52_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9880..11691)
DNA (1812bp) protein (604aa)
primosomal protein N; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Primosomal protein N' id=3315413 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
priA; primosomal protein N'
13_1_20cm_4_scaffold_52_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11693..12301)
DNA (609bp) protein (203aa)
phage SPO1 DNA polymerase-like protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=3315415 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_52_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12379..13602)
DNA (1224bp) protein (408aa)
coaBC; coenzyme A biosynthesis bifunctional protein coaBC (EC:4.1.1.36 6.3.2.5); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5] Tax=RIFCS
coaBC; coenzyme A biosynthesis bifunctional protein coaBC (EC:4.1.1.36 6.3.2.5)
Coenzyme A biosynthesis bifunctional protein CoaBC id=3315417 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_52_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13602..13814)
DNA (213bp) protein (71aa)
DNA-directed RNA polymerase subunit omega Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA-directed RNA polymerase subunit omega id=3315419 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-directed RNA polymerase subunit omega
13_1_20cm_4_scaffold_52_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13814..14443)
DNA (630bp) protein (210aa)
gmk; guanylate kinase (EC:2.7.4.8) Tax=GWA2_Rokubacteria_73_35_curated
Guanylate kinase id=3315421 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
gmk; guanylate kinase
13_1_20cm_4_scaffold_52_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14436..14705)
DNA (270bp) protein (90aa)
hypothetical protein; K09777 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
UPF0296 protein GT20_2421 id=3315424 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_52_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14718..15602)
DNA (885bp) protein (295aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=3315427 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_52_24
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15677..18277)
DNA (2601bp) protein (867aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XUT1_SORCE rbh
Uncharacterized protein {ECO:0000313|EMBL:AGP36101.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium c
hypothetical protein
13_1_20cm_4_scaffold_52_25
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

18476..19333
DNA (858bp) protein (286aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14625187 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_52_26
unknown

Not on your lists

19330..19431
DNA (102bp) protein (34aa)

This feature has no annotations

13_1_20cm_4_scaffold_52_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19494..20216
DNA (723bp) protein (241aa)
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter ATP-binding protein id=4205667 bin=GWC2_Methylomirabilis_70_24 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter ATP-binding protein
13_1_20cm_4_scaffold_52_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20213..21028
DNA (816bp) protein (272aa)
hypothetical protein; K02050 NitT/TauT family transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K02050 NitT/TauT family transport system permease protein id=14625185 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_1_20cm_4_scaffold_52_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21025..21387
DNA (363bp) protein (121aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_4_scaffold_52_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21581..22213
DNA (633bp) protein (211aa)
OmpA/MotB domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
OmpA/MotB domain protein id=1746151 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpA/MotB domain-containing protein
Displaying items 1-30 of 107 in total

View Taxonomy