ggKbase home page

13_1_20cm_4_scaffold_66

Search features with annotation key words

Displaying items 1-30 of 42 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_66_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

1..1431
DNA (1431bp) protein (477aa)
dihydropyrimidinase; K01464 dihydropyrimidinase [EC:3.5.2.2] Tax=GWA2_Rokubacteria_70_23_curated
dihydropyrimidinase (EC:3.5.2.2)
Dihydropyrimidinase id=4532701 bin=GWF2_Methylomirabilis_70_14 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_66_2
unknown

Not on your lists

comp(1435..2475)
DNA (1041bp) protein (347aa)
Nitrilase {ECO:0000313|EMBL:CPR18283.1}; EC=3.5.5.1 {ECO:0000313|EMBL:CPR18283.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IW32_METNO
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
13_1_20cm_4_scaffold_66_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2475..3863)
DNA (1389bp) protein (463aa)
branched chain amino acid ABC transporter substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
Extracellular ligand-binding receptor id=5022303 bin=GWA2_Methylomirabilis_73_35 species=Haloferax denitrificans genus=Haloferax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched chain amino acid ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_66_4
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(3878..4684)
DNA (807bp) protein (269aa)
Oxidoreductase, molybdopterin binding {ECO:0000313|EMBL:ACC81219.1}; EC=1.7.1.3 {ECO:0000313|EMBL:ACC81219.1};; TaxID=63737 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source=
oxidoreductase, molybdopterin binding (EC:1.7.1.3)
Oxidoreductase, molybdopterin binding n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2ITI8_NOSP7
13_1_20cm_4_scaffold_66_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(4906..5109)
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM64362.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
13_1_20cm_4_scaffold_66_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(5109..6053)
DNA (945bp) protein (315aa)
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
Putative uncharacterized protein id=4845174 bin=GWC2_Methylomirabilis_70_16 species=Kribbella flavida genus=Kribbella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
hypothetical protein
13_1_20cm_4_scaffold_66_7
Candidatus Methanoperedens nitroreducens, Candidatus Methanoperedens, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

6426..7043
DNA (618bp) protein (206aa)
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain {ECO:0000313|EMBL:KCZ73200.1}; EC=3.1.1.61 {ECO:0000313|EMBL:KCZ73200.1};; TaxID=1392998 species="Archa
CheB methylesterase (EC:3.1.1.61)
CheB methylesterase n=1 Tax=Streptomyces rimosus subsp. rimosus ATCC 10970 RepID=L8ENT9_STRRM
13_1_20cm_4_scaffold_66_8
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7040..8944
DNA (1905bp) protein (635aa)
hypothetical protein n=1 Tax=Kribbella catacumbae RepID=UPI000370C33A
Chemotaxis protein methyltransferase CheR {ECO:0000313|EMBL:AEK42691.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis m
cheR; chemotaxis protein methyltransferase CheR
13_1_20cm_4_scaffold_66_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

8961..10046
DNA (1086bp) protein (362aa)
glutamine-fructose-6-phosphate transaminase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
glutamine-fructose-6-phosphate transaminase (EC:2.6.1.16)
Glutamine-fructose-6-phosphate transaminase (Isomerizing) id=1866170 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_66_10
unknown

Not on your lists

10181..10378
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_20cm_4_scaffold_66_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10386..10877)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM78 RepID=J3DHZ9_9PSED
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
hypothetical protein
13_1_20cm_4_scaffold_66_12
Pseudomonas sp. GM102, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10874..11227)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM102 RepID=J2N9J3_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EJM07344.1}; Flags: Precursor;; TaxID=1144321 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source
hypothetical protein
13_1_20cm_4_scaffold_66_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11287..11961)
DNA (675bp) protein (225aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=3960154 bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_66_14
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(11985..12311)
DNA (327bp) protein (109aa)
Putative blue copper protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZU8_CALAS
Putative blue copper protein {ECO:0000313|EMBL:BAL98535.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain
putative blue copper protein
13_1_20cm_4_scaffold_66_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12372..13799)
DNA (1428bp) protein (476aa)
rhlB; ATP-dependent RNA helicase RhlB; K03732 ATP-dependent RNA helicase RhlB [EC:3.6.4.13] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DEAD/DEAH box helicase domain protein id=4663773 bin=GWF2_Methylomirabilis_70_14 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
DEAD/DEAH box helicase
13_1_20cm_4_scaffold_66_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13804..14559)
DNA (756bp) protein (252aa)
Sec-independent protein translocase protein TatC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Sec-independent protein translocase protein TatC id=1866211 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Sec-independent protein translocase protein TatC
13_1_20cm_4_scaffold_66_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14564..15352)
DNA (789bp) protein (263aa)
phosphomethylpyrimidine kinase; K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] Tax=GWA2_Rokubacteria_73_35_curated
Phosphomethylpyrimidine kinase id=4070960 bin=GWC2_Methylomirabilis_70_24 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
phosphomethylpyrimidine kinase
13_1_20cm_4_scaffold_66_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(15434..16051)
DNA (618bp) protein (206aa)
uroporphyrin-III C/tetrapyrrole methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] Tax=CSP1_6_Rokubacteria
uroporphyrin-III C/tetrapyrrole methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] id=14625253 bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
uroporphyrin-III C/tetrapyrrole methyltransferase
13_1_20cm_4_scaffold_66_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16293..17540)
DNA (1248bp) protein (416aa)
clpX; ATP-dependent Clp protease ATP-binding subunit clpX (EC:3.4.21.92) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
clpX; ATP-dependent Clp protease ATP-binding subunit clpX (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding subunit ClpX id=1866218 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_66_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17555..18190)
DNA (636bp) protein (212aa)
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit id=4942504 bin=GWC2_Methylomirabilis_70_16 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_1_20cm_4_scaffold_66_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18202..19470)
DNA (1269bp) protein (423aa)
trigger factor; K03545 trigger factor Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
trigger factor; K03545 trigger factor id=14625256 bin=bin7_NC10_sister species=Natranaerobius thermophilus genus=Natranaerobius taxon_order=Natranaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
trigger factor
13_1_20cm_4_scaffold_66_trna_4
unknown

Not on your lists

comp(19482..19573)
DNA (92bp)
transferRNA
13_1_20cm_4_scaffold_66_22
unknown

Not on your lists

19808..20152
DNA (345bp) protein (115aa)

This feature has no annotations

13_1_20cm_4_scaffold_66_23
Burkholderia sp. RPE67, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20215..20664
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Burkholderia sp. YI23 RepID=G8M6B1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:BAO85806.1}; TaxID=758796 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. R
putative uncharacterized protein
13_1_20cm_4_scaffold_66_24
unknown

Not on your lists

comp(20726..20929)
DNA (204bp) protein (68aa)

This feature has no annotations

13_1_20cm_4_scaffold_66_25
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21355..22812
DNA (1458bp) protein (486aa)
Mate efflux family protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I4N2_9BURK
mate efflux family protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
mate efflux family protein
13_1_20cm_4_scaffold_66_26
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22665..23624)
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00031E8EDD
Uncharacterized protein {ECO:0000313|EMBL:ETX07424.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
13_1_20cm_4_scaffold_66_27
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23789..25792
DNA (2004bp) protein (668aa)
top6B; DNA topoisomerase VI subunit B (EC:5.99.1.3); K03167 DNA topoisomerase VI subunit B [EC:5.99.1.3] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
top6B; DNA topoisomerase VI subunit B (EC:5.99.1.3)
Type 2 DNA topoisomerase 6 subunit B n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEY4_9BACT rbh
13_1_20cm_4_scaffold_66_28
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25802..26905
DNA (1104bp) protein (368aa)
top6A; DNA topoisomerase VI subunit A (EC:5.99.1.3); K03166 DNA topoisomerase VI subunit A [EC:5.99.1.3] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
top6A; DNA topoisomerase VI subunit A (EC:5.99.1.3)
Type 2 DNA topoisomerase 6 subunit A n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEY5_9BACT
13_1_20cm_4_scaffold_66_29
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(26916..28484)
DNA (1569bp) protein (523aa)
Na+/H+ antiporter n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMX7_9BACT
Na+/H+ antiporter {ECO:0000313|EMBL:EEF58773.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;"
Na+/H+ antiporter
Displaying items 1-30 of 42 in total

View Taxonomy