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13_1_20cm_4_scaffold_691

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Displaying 29 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_691_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..365)
DNA (363bp) protein (121aa)
AMP-dependent synthetase and ligase Tax=GWA2_Rokubacteria_73_35_curated
AMP-dependent synthetase and ligase id=2336343 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
AMP-binding protein
13_1_20cm_4_scaffold_691_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(422..1225)
DNA (804bp) protein (268aa)
ABC-type transporter, periplasmic component n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K6U7_CUPNH
amino acid ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
h16_A3199; ABC-type transporter, periplasmic component
13_1_20cm_4_scaffold_691_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1236..1643)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000378EEDC
h16_A1812; hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
hypothetical protein
13_1_20cm_4_scaffold_691_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1752..2474
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AAA536-G10 RepID=UPI00037BFBF2
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
isochorismatase hydrolase
13_1_20cm_4_scaffold_691_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2471..3538
DNA (1068bp) protein (356aa)
type 11 methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase family protein id=3670071 bin=GWA2_Methylomirabilis_73_35 species=Saccharomonospora cyanea genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type 12 methyltransferase
13_1_20cm_4_scaffold_691_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3833..5269)
DNA (1437bp) protein (479aa)
peptide ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC transporter peptide-binding protein id=3884414 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_691_7
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(5274..6218)
DNA (945bp) protein (315aa)
esterase; K01432 arylformamidase [EC:3.5.1.9] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D6B735
esterase
13_1_20cm_4_scaffold_691_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6215..6532)
DNA (318bp) protein (106aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4799901 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_691_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(6577..7239)
DNA (663bp) protein (221aa)
transglutaminase-like enzyme, putative cysteine protease Tax=GWA2_Rokubacteria_70_23_curated
Transglutaminase-like enzyme, putative cysteine protease id=4180752 bin=GWC2_Methylomirabilis_70_24 species=Magnetospirillum magneticum genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
transglutaminase-like enzyme, putative cysteine protease
13_1_20cm_4_scaffold_691_10
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(7249..8601)
DNA (1353bp) protein (451aa)
putative UDP-N-acetylmuramate-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] Tax=RBG_16_RIF_WS3X_71_46_curated
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P0C4_9BACT id=5223295 bin=16ft_combo_ws3_JS1 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
13_1_20cm_4_scaffold_691_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8772..10076
DNA (1305bp) protein (435aa)
aminopeptidase (EC:3.4.13.9)
Putative aminopeptidase putative Proline or Methionine dipeptidase n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=A4Z236_BRASO
peptidase M24 Tax=GWA2_Rokubacteria_73_35_curated
13_1_20cm_4_scaffold_691_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10130..11134)
DNA (1005bp) protein (335aa)
oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxidoreductase id=2247794 bin=GWA2_Methylomirabilis_73_35 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase
13_1_20cm_4_scaffold_691_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11153..12103)
DNA (951bp) protein (317aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002E3C317
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
hypothetical protein
13_1_20cm_4_scaffold_691_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(12120..12974)
DNA (855bp) protein (285aa)
putative oxidoreductase Tax=GWC2_Rokubacteria_70_16_curated
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases id=2655987 bin=GWC2_Methylomirabilis_70_16 species=uncultured Chloroflexi bacterium HF0200_06I16 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
luciferase-like protein
13_1_20cm_4_scaffold_691_15
unknown

Not on your lists

comp(13170..13304)
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_20cm_4_scaffold_691_16
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

comp(13308..14537)
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q84CW3_9BACT
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
13_1_20cm_4_scaffold_691_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(14554..15480)
DNA (927bp) protein (309aa)
Lytic transglycosylase, catalytic Tax=GWC2_Rokubacteria_70_16_curated
Lytic transglycosylase, catalytic id=3773019 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
lytic transglycosylase, catalytic
13_1_20cm_4_scaffold_691_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(15690..16718)
DNA (1029bp) protein (343aa)
Putative amidohydrolase 2 protein n=2 Tax=Ralstonia solanacearum RepID=B5SFS4_RALSL
putative hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
putative hydrolase
13_1_20cm_4_scaffold_691_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16744..18831)
DNA (2088bp) protein (696aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pimF; enoyl-CoA hydratase (EC:1.1.1.35 4.2.1.17)
Fatty oxidation complex, alpha subunit id=4279011 bin=GWA2_Methylomirabilis_73_35 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_691_20
R_NC10_66_22, NC10, Bacteria

Not on your lists

19015..20289
DNA (1275bp) protein (425aa)
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Putative sugar uptake ABC transporter periplasmic solute-binding protein id=2228895 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_691_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20623..20886
DNA (264bp) protein (88aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fis family two component sigma-54 specific transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX id=14627944 bin=bin7_NC10_sister species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_691_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

21360..22310
DNA (951bp) protein (317aa)
amino acid ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=4646454 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. ORS 375 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular ligand-binding receptor
13_1_20cm_4_scaffold_691_23
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

22307..22447
DNA (141bp) protein (47aa)
amino acid ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=4646454 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. ORS 375 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_691_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

22444..23169
DNA (726bp) protein (242aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter related id=4646457 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
13_1_20cm_4_scaffold_691_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

23153..23872
DNA (720bp) protein (240aa)
amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
Salicylaldehyde dehydrogenase (Modular protein) id=4646459 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_20cm_4_scaffold_691_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

23874..24743
DNA (870bp) protein (290aa)
ABC transporter integral membrane subunit; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC-type transporter, integral membrane subunit id=4646461 bin=GWA2_Methylomirabilis_73_35 species=Flexistipes sinusarabici genus=Flexistipes taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched-chain amino acid ABC transporter membrane protein
13_1_20cm_4_scaffold_691_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24743..25702
DNA (960bp) protein (320aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
Inner-membrane translocator id=4646463 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative ABC transporter permiase component
13_1_20cm_4_scaffold_691_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(25662..27692)
DNA (2031bp) protein (677aa)
molybdopterin-binding oxidoreductase Tax=GWA2_Rokubacteria_73_35_curated
Oxidoreductase, molybdopterin-binding protein id=2306498 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
oxidoreductase, molybdopterin-binding protein
13_1_20cm_4_scaffold_691_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27777..28097)
DNA (321bp) protein (107aa)
dehydratase n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B39DB3
dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dehydratase
Displaying 29 items

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