ggKbase home page

13_1_20cm_4_scaffold_730

Search features with annotation key words

Displaying 25 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_730_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..860)
DNA (858bp) protein (286aa)
dienelactone hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dienelactone hydrolase id=4969018 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dienelactone hydrolase
13_1_20cm_4_scaffold_730_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

996..1505
DNA (510bp) protein (170aa)
Putative uncharacterized protein Tax=GWA2_Rokubacteria_70_23_curated
Putative uncharacterized protein id=3909996 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioredoxin domain-containing protein
13_1_20cm_4_scaffold_730_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2289..3653
DNA (1365bp) protein (455aa)
DNA polymerase II Tax=GWA2_Rokubacteria_73_35_curated
DNA polymerase id=4969020 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA polymerase II
13_1_20cm_4_scaffold_730_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3505..3843)
DNA (339bp) protein (113aa)
RNP-1 like RNA-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNP-1 like RNA-binding protein id=4969022 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNP-1 like RNA-binding protein
13_1_20cm_4_scaffold_730_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3961..4755)
DNA (795bp) protein (265aa)
hypothetical protein; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
short-chain dehydrogenase/reductase SDR (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR id=4969023 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_730_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4755..5318)
DNA (564bp) protein (188aa)
hypothetical protein; K09763 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=4969024 bin=GWA2_Methylomirabilis_73_35 species=Blastococcus saxobsidens genus=Blastococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_730_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5315..5836)
DNA (522bp) protein (174aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RDD domain containing protein id=4969025 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
membrane protein
13_1_20cm_4_scaffold_730_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

5858..7060
DNA (1203bp) protein (401aa)
molybdopterin-guanine dinucleotide biosynthesis protein B; K03750 molybdopterin molybdotransferase [EC:2.10.1.1] Tax=GWC2_Rokubacteria_70_16_curated
Molybdenum cofactor synthesis domain protein id=4969026 bin=GWA2_Methylomirabilis_73_35 species=Thioalkalivibrio thiocyanoxidans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdopterin-guanine dinucleotide biosynthesis protein B
13_1_20cm_4_scaffold_730_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7053..8627
DNA (1575bp) protein (525aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14627421 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_730_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8629..8898
DNA (270bp) protein (90aa)
UPF0176 protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UPF0176 protein id=3926920 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_730_11
unknown

Not on your lists

8938..9048
DNA (111bp) protein (37aa)

This feature has no annotations

13_1_20cm_4_scaffold_730_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

9056..10618
DNA (1563bp) protein (521aa)
id=14627849 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
13_1_20cm_4_scaffold_730_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10618..11532
DNA (915bp) protein (305aa)
transketolase, N-terminal subunit; K00615 transketolase [EC:2.2.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transketolase (EC:2.2.1.1); K00615 transketolase [EC:2.2.1.1] id=14627850 bin=bin7_NC10_sister species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
transketolase (EC:2.2.1.1)
13_1_20cm_4_scaffold_730_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11542..12468
DNA (927bp) protein (309aa)
transketolase central region; K00615 transketolase [EC:2.2.1.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
transketolase; K00615 transketolase [EC:2.2.1.1] id=14627851 bin=bin7_NC10_sister species=Anaeromusa acidaminophila genus=Anaeromusa taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
transketolase, central region
13_1_20cm_4_scaffold_730_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(12494..13234)
DNA (741bp) protein (247aa)
hypothetical protein Tax=CSP1_6_Rokubacteria
High-affinity nickel-transporter id=2419356 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_730_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13247..14041)
DNA (795bp) protein (265aa)
ABC transporter; K09686 antibiotic transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter; K09686 antibiotic transport system permease protein id=14632626 bin=bin9_gal15 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
ABC transporter
13_1_20cm_4_scaffold_730_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14170..14850)
DNA (681bp) protein (227aa)
polyamine-transporting ATPase (EC:3.6.3.31); K09687 antibiotic transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
polyamine-transporting ATPase (EC:3.6.3.31)
Polyamine-transporting ATPase id=2419362 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_730_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

14951..15199
DNA (249bp) protein (83aa)
Rieske (2Fe-2S) domain-containing protein Tax=GWA2_Rokubacteria_70_23_curated
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase id=4887996 bin=GWC2_Methylomirabilis_70_24 species=Herbaspirillum sp. YR522 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
2Fe-2S ferredoxin
13_1_20cm_4_scaffold_730_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15196..15603
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PC53_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_20cm_4_scaffold_730_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15607..16056)
DNA (450bp) protein (150aa)
glycosyl transferase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glycosyl transferase id=2419366 bin=GWA2_Methylomirabilis_73_35 species=Oscillatoriales cyanobacterium JSC-12 genus=unknown taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyl transferase family protein
13_1_20cm_4_scaffold_730_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16230..17957)
DNA (1728bp) protein (576aa)
glycosyl transferase family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glycosyl transferase family 39 id=2419453 bin=GWA2_Methylomirabilis_73_35 species=Terriglobus saanensis genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
4-amino-4-deoxy-L-arabinose transferase
13_1_20cm_4_scaffold_730_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17964..18281)
DNA (318bp) protein (106aa)
molybdopterin binding domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Molybdopterin binding domain protein id=2419455 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdopterin-binding domain-containing protein
13_1_20cm_4_scaffold_730_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18281..18547)
DNA (267bp) protein (89aa)
molybdopterin binding domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
Molybdopterin binding domain protein id=2419455 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdopterin binding domain-containing protein
13_1_20cm_4_scaffold_730_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18590..19402
DNA (813bp) protein (271aa)
short-chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Short-chain dehydrogenase/reductase SDR id=3951909 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase
13_1_20cm_4_scaffold_730_25
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

19407..20294
DNA (888bp) protein (296aa)
Undecaprenyl-diphosphatase {ECO:0000255|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000255|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000255|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphat
Undecaprenyl-diphosphatase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=UPPP_KORVE
UDP-diphosphatase
Displaying 25 items

View Taxonomy