ggKbase home page

13_1_20cm_4_scaffold_807

Search features with annotation key words

Displaying items 1-30 of 36 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_807_1
unknown

Not on your lists

2..127
DNA (126bp) protein (42aa)

This feature has no annotations

13_1_20cm_4_scaffold_807_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

69..1391
DNA (1323bp) protein (441aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=3234906 bin=GWC2_Methylomirabilis_70_16 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
hypothetical protein
13_1_20cm_4_scaffold_807_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1391..2482
DNA (1092bp) protein (364aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3775497 bin=GWF2_Methylomirabilis_70_14 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CBS domain-containing protein
13_1_20cm_4_scaffold_807_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2500..3174
DNA (675bp) protein (225aa)
dienelactone hydrolase-like enzyme (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Dienelactone hydrolase-like enzyme id=1724740 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Dienelactone hydrolase family
13_1_20cm_4_scaffold_807_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

3216..3932
DNA (717bp) protein (239aa)
Crp/Fnr family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Crp/Fnr family transcriptional regulator id=14625479 bin=bin7_NC10_sister species=Nocardioides sp. CF8 genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
Crp/Fnr family transcriptional regulator
13_1_20cm_4_scaffold_807_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(3933..4421)
DNA (489bp) protein (163aa)
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L17 id=1724741 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L17
13_1_20cm_4_scaffold_807_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4418..5404)
DNA (987bp) protein (329aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4666368 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_807_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(5423..6046)
DNA (624bp) protein (208aa)
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S4 id=4666314 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S4
13_1_20cm_4_scaffold_807_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(6058..6483)
DNA (426bp) protein (142aa)
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
30S ribosomal protein S11 id=4666313 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S11
13_1_20cm_4_scaffold_807_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(6487..6909)
DNA (423bp) protein (141aa)
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=14625537 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rpsM; 30S ribosomal protein S13
13_1_20cm_4_scaffold_807_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6925..7038)
DNA (114bp) protein (38aa)
hypothetical protein; K02919 large subunit ribosomal protein L36 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L36 id=4666311 bin=GWA2_Methylomirabilis_73_35 species=Propionibacterium freudenreichii genus=Propionibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_807_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7091..7309)
DNA (219bp) protein (73aa)
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Translation initiation factor IF-1 id=4666310 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
infA; translation initiation factor IF-1
13_1_20cm_4_scaffold_807_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7470..8225)
DNA (756bp) protein (252aa)
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] id=14625535 bin=bin7_NC10_sister species=Orenia marismortui genus=Orenia taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methionine aminopeptidase, type I Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
methionine aminopeptidase, type I
13_1_20cm_4_scaffold_807_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(8222..8866)
DNA (645bp) protein (215aa)
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] Tax=CSP1_6_Rokubacteria
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3] id=14625534 bin=bin7_NC10_sister species=Thermodesulfobacterium thermophilum genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
adenylate kinase (EC:2.7.4.3)
13_1_20cm_4_scaffold_807_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(8873..10201)
DNA (1329bp) protein (443aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein translocase subunit SecY id=4716762 bin=GWC2_Methylomirabilis_70_16 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
secY; preprotein translocase subunit SecY
13_1_20cm_4_scaffold_807_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(10198..10665)
DNA (468bp) protein (156aa)
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L15 id=4666306 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L15
13_1_20cm_4_scaffold_807_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(10655..10843)
DNA (189bp) protein (63aa)
rpmD; 50S ribosomal protein L30; K02907 large subunit ribosomal protein L30 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L30 id=4666305 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmD; 50S ribosomal protein L30
13_1_20cm_4_scaffold_807_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(10824..11363)
DNA (540bp) protein (180aa)
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S5 id=4666304 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsE; 30S ribosomal protein S5
13_1_20cm_4_scaffold_807_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(11384..11749)
DNA (366bp) protein (122aa)
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L18 id=4799428 bin=GWC2_Methylomirabilis_70_24 species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
50S ribosomal protein L18
13_1_20cm_4_scaffold_807_20
Trichuris trichiura, Trichuris, Trichocephalida, Dorylaimia, Nematoda, Metazoa

Not on your lists


comp(11746..12579)
DNA (834bp) protein (278aa)
Ribosomal protein L6, putative n=2 Tax=cellular organisms RepID=M3S4D6_ENTHI
Ribosomal S5 and Ribosomal S8 and Ribosomal L6 an d Ribosomal S5 C domain containing protein {ECO:0000313|EMBL:CDW59748.1}; TaxID=36087 species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Doryl
rpsH; 30S ribosomal protein S8
13_1_20cm_4_scaffold_807_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(12587..12772)
DNA (186bp) protein (62aa)
rpsZ; 30S ribosomal protein S14 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L5 id=4666301 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsZ; 30S ribosomal protein S14
13_1_20cm_4_scaffold_807_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(12784..13464)
DNA (681bp) protein (227aa)
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L5 id=4799432 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
rplE; 50S ribosomal protein L5
13_1_20cm_4_scaffold_807_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(13470..13799)
DNA (330bp) protein (110aa)
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L24 id=4666300 bin=GWA2_Methylomirabilis_73_35 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplX; 50S ribosomal protein L24
13_1_20cm_4_scaffold_807_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(13799..14149)
DNA (351bp) protein (117aa)
rplN; Ribosomal protein L14; K02874 large subunit ribosomal protein L14 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L14 id=4666299 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplN; 50S ribosomal protein L14
13_1_20cm_4_scaffold_807_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(14171..14425)
DNA (255bp) protein (85aa)
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
30S ribosomal protein S17 id=4666298 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S17
13_1_20cm_4_scaffold_807_26
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(14429..14779)
DNA (351bp) protein (117aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L29 id=4666297 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L29
13_1_20cm_4_scaffold_807_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(14789..15205)
DNA (417bp) protein (139aa)
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16 Tax=GWA2_Rokubacteria_73_35_curated
50S ribosomal protein L16 id=4716775 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rplP; 50S ribosomal protein L16
13_1_20cm_4_scaffold_807_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(15216..15860)
DNA (645bp) protein (215aa)
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=GWA2_Rokubacteria_73_35_curated
rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 id=14625519 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rpsC; 30S ribosomal protein S3
13_1_20cm_4_scaffold_807_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(15860..16363)
DNA (504bp) protein (168aa)
ribosomal protein L22, bacterial type Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L22 id=4666294 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplV; 50S ribosomal protein L22
13_1_20cm_4_scaffold_807_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(16367..16660)
DNA (294bp) protein (98aa)
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 Tax=GWA2_Rokubacteria_73_35_curated
SSU ribosomal protein S19p (S15e) id=4666293 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsS; 30S ribosomal protein S19
Displaying items 1-30 of 36 in total

View Taxonomy