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13_1_40cm_2_scaffold_929

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Displaying items 1-30 of 49 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_929_1
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

2..538
DNA (537bp) protein (179aa)
iscS; cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase id=3714107 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_929_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

552..962
DNA (411bp) protein (137aa)
FeS cluster assembly scaffold IscU Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
iscU; iron-sulfur cluster assembly protein IscU; K04488 nitrogen fixation protein NifU and related proteins id=14625363 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
iscU; iron-sulfur cluster assembly protein IscU
13_1_40cm_2_scaffold_929_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

983..1312
DNA (330bp) protein (110aa)
iscA; iron-sulfur cluster assembly protein IscA; K13628 iron-sulfur cluster assembly protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Iron-sulfur cluster assembly protein IscA id=3714096 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iscA; iron-sulfur cluster assembly protein IscA
13_1_40cm_2_scaffold_929_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1380..1982
DNA (603bp) protein (201aa)
hscB; co-chaperone protein HscB; K04082 molecular chaperone HscB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Co-chaperone protein HscB (Hsc20) id=3714094 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hscB; co-chaperone protein HscB
13_1_40cm_2_scaffold_929_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1960..3789
DNA (1830bp) protein (610aa)
hscA; chaperone protein HscA; K04043 molecular chaperone DnaK Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chaperone protein HscA (Hsc66) id=3735880 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hscA; chaperone protein HscA
13_1_40cm_2_scaffold_929_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

3789..4130
DNA (342bp) protein (114aa)
fdx; ferredoxin, 2Fe-2S type, ISC system; K04755 ferredoxin, 2Fe-2S Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Ferredoxin, 2Fe-2S type, ISC system id=3714016 bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ferredoxin
13_1_40cm_2_scaffold_929_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4127..4255
DNA (129bp) protein (43aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=3714014 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_929_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4279..4503)
DNA (225bp) protein (75aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3714012 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_929_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4503..4859)
DNA (357bp) protein (119aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3714010 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_929_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4864..5187)
DNA (324bp) protein (108aa)
Putative uncharacterized protein id=3714008 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_40cm_2_scaffold_929_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5229..6386
DNA (1158bp) protein (386aa)
iscS; cysteine desulfurase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase id=4206292 bin=GWF2_Methylomirabilis_70_14 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_929_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6383..6754
DNA (372bp) protein (124aa)
nifU; FeS cluster assembly scaffold protein NifU; K04488 nitrogen fixation protein NifU and related proteins Tax=GWA2_Rokubacteria_73_35_curated
Cysteine desulfurase NifS id=4848471 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FeS cluster assembly scaffold protein NifU
13_1_40cm_2_scaffold_929_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6757..7419
DNA (663bp) protein (221aa)
cysE; serine acetyltransferase (EC:2.3.1.30) Tax=GWA2_Rokubacteria_73_35_curated
cysE; serine acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase id=4848469 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_40cm_2_scaffold_929_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7416..7595
DNA (180bp) protein (60aa)
Excisionase/Xis, DNA-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Excisionase/Xis, DNA-binding protein id=4848467 bin=GWA2_Methylomirabilis_73_35 species=Nitrosococcus oceani genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_929_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7592..8155
DNA (564bp) protein (188aa)
metal dependent phosphohydrolase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Metal dependent phosphohydrolase id=4848465 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase
13_1_40cm_2_scaffold_929_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8152..9408
DNA (1257bp) protein (419aa)
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7) id=14625377 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7)
13_1_40cm_2_scaffold_929_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9495..10694
DNA (1200bp) protein (400aa)
extracellular ligand-binding receptor Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
extracellular ligand-binding receptor id=14625378 bin=bin7_NC10_sister species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
extracellular ligand-binding receptor
13_1_40cm_2_scaffold_929_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10742..11494
DNA (753bp) protein (251aa)
branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
branched-chain amino acid ABC transporter ATP-binding protein id=4848432 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_2_scaffold_929_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11487..12263
DNA (777bp) protein (259aa)
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter, ATP-binding protein id=3782413 bin=GWF2_Methylomirabilis_70_14 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
13_1_40cm_2_scaffold_929_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12263..14080
DNA (1818bp) protein (606aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] Tax=GWA2_Rokubacteria_73_35_curated
AMP-dependent synthetase and ligase id=4806455 bin=GWC2_Methylomirabilis_70_16 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
AMP-dependent synthetase and ligase
13_1_40cm_2_scaffold_929_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14095..15075
DNA (981bp) protein (327aa)
ABC-type branched-chain amino acid transport system, permease component id=4848424 bin=GWA2_Methylomirabilis_73_35 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
inner-membrane translocator
13_1_40cm_2_scaffold_929_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15131..16012
DNA (882bp) protein (294aa)
Inner-membrane translocator id=4848421 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
inner-membrane translocator
13_1_40cm_2_scaffold_929_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16126..16881
DNA (756bp) protein (252aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4848419 bin=GWA2_Methylomirabilis_73_35 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_40cm_2_scaffold_929_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16887..17870
DNA (984bp) protein (328aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3782407 bin=GWF2_Methylomirabilis_70_14 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_929_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17877..19223
DNA (1347bp) protein (449aa)
biotin carboxylase (EC:6.3.4.14 6.4.1.1); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Carbamoyl-phosphate synthase L chain ATP-binding protein id=4748227 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Carbamoyl-phosphate synthase L chain ATP-binding protein
13_1_40cm_2_scaffold_929_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

19216..19431
DNA (216bp) protein (72aa)
biotin/lipoic acid binding domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Biotin/lipoyl attachment domain-containing protein id=4748228 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
biotin/lipoyl attachment domain-containing protein
13_1_40cm_2_scaffold_929_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19458..20954)
DNA (1497bp) protein (499aa)
rpoD; RNA polymerase sigma factor rpoD; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=3388592 bin=GWC2_Methylomirabilis_70_24 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rpoD; RNA polymerase sigma factor rpoD
13_1_40cm_2_scaffold_929_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21376..22746
DNA (1371bp) protein (457aa)
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
malate dehydrogenase (EC:1.1.1.38)
Malate dehydrogenase (Oxaloacetate decarboxylating) id=4153740 bin=GWC2_Methylomirabilis_70_16 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_929_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

22743..23459
DNA (717bp) protein (239aa)
glycosyl transferase family 2 protein (EC:2.4.1.-); K00729 dolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117] Tax=GWA2_Rokubacteria_73_35_curated
glycosyl transferase family 2 protein (EC:2.4.1.-)
Glycosyl transferase, family 2 id=2265642 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_929_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

23907..24599
DNA (693bp) protein (231aa)
Aminotransferase class I and II id=2265644 bin=GWA2_Methylomirabilis_73_35 species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aspartate aminotransferase Tax=GWA2_Rokubacteria_73_35_curated
aspartate aminotransferase
Displaying items 1-30 of 49 in total

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