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14_0929_12_30cm_scaffold_1105

Search features with annotation key words

Displaying 29 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
14_0929_12_30cm_scaffold_1105_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

170..1651
DNA (1482bp) protein (494aa)
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
UDP-N-acetylmuramyl-tripeptide synthetase id=3503986 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_1105_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1660..3045
DNA (1386bp) protein (462aa)
murF; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase id=3503981 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_1105_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3055..4134
DNA (1080bp) protein (360aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase id=3503978 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_1105_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4328..5788
DNA (1461bp) protein (487aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase id=4599628 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_1105_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5857..6954
DNA (1098bp) protein (366aa)
stage V sporulation protein E; K03588 cell division protein FtsW id=14625505 bin=bin7_NC10_sister species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
stage V sporulation protein E
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
14_0929_12_30cm_scaffold_1105_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6947..8347
DNA (1401bp) protein (467aa)
murC; UDP-N-acetylmuramate--L-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] id=14625504 bin=bin7_NC10_sister species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
murC; UDP-N-acetylmuramate--L-alanine ligase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
14_0929_12_30cm_scaffold_1105_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8341..9219
DNA (879bp) protein (293aa)
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase id=4191405 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_1105_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9219..10064
DNA (846bp) protein (282aa)
Polypeptide-transport-associated domain protein FtsQ-type id=4191404 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
polypeptide-transport-associated domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_1105_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10064..11308
DNA (1245bp) protein (415aa)
Cell division protein ftsA id=4191403 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
ftsA; cell division protein FtsA
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
14_0929_12_30cm_scaffold_1105_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11412..12335
DNA (924bp) protein (308aa)
Cell division protein FtsZ id=4191402 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ftsZ; cell division protein ftsZ
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_1105_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12328..13089
DNA (762bp) protein (254aa)
Putative uncharacterized protein id=4191401 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_1105_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13201..13896
DNA (696bp) protein (232aa)
hypothetical protein; K06997 id=14625496 bin=bin7_NC10_sister species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alanine racemase domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_1105_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13893..14714
DNA (822bp) protein (274aa)
proC; pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase id=4599706 bin=GWC2_Methylomirabilis_70_16 species=Flexistipes sinusarabici genus=Flexistipes taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_1105_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14719..15024
DNA (306bp) protein (102aa)
Uncharacterized protein id=1871976 bin=GWB2_Proteobacteria_55_19 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_1105_15
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

15041..15514
DNA (474bp) protein (158aa)
cell-division initiation protein; K04074 cell division initiation protein id=14625493 bin=bin7_NC10_sister species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
cell division protein DivIVA
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
14_0929_12_30cm_scaffold_1105_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15486..15773
DNA (288bp) protein (96aa)
Uncharacterized protein id=4599709 bin=GWC2_Methylomirabilis_70_16 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_1105_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15770..16810
DNA (1041bp) protein (347aa)
methylthioribose-1-phosphate isomerase (EC:5.3.1.23)
Methylthioribose-1-phosphate isomerase id=3779777 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
14_0929_12_30cm_scaffold_1105_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16854..18440
DNA (1587bp) protein (529aa)
SagB-type dehydrogenase domain protein id=3779776 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Haloterrigena taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_1105_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18437..19579
DNA (1143bp) protein (381aa)
sga; Serine-glyoxylate aminotransferase (EC:2.6.1.45)
Serine-glyoxylate aminotransferase id=3779775 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_1105_20
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

19576..21159
DNA (1584bp) protein (528aa)
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95) id=14625486 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
Tax=CSP1_6_Rokubacteria
14_0929_12_30cm_scaffold_1105_21
unknown

Not on your lists

comp(21149..21667)
DNA (519bp) protein (173aa)

This feature has no annotations

14_0929_12_30cm_scaffold_1105_22
Caminibacter mediatlanticus, Caminibacter, Nautiliales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21673..22035)
DNA (363bp) protein (121aa)
Possible fatty acid hydroxylase {ECO:0000313|EMBL:EDM24293.1}; TaxID=391592 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Nautiliales; Nautiliaceae; Caminibacter.;" source="Caminibacter mediatlanticus TB-2.;"
14_0929_12_30cm_scaffold_1105_23
unknown

Not on your lists

22336..22461
DNA (126bp) protein (42aa)

This feature has no annotations

14_0929_12_30cm_scaffold_1105_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

22458..26540
DNA (4083bp) protein (1361aa)
TPR repeat-containing adenylate/guanylate cyclase id=14625908 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
adenylate/guanylate cyclase
Tax=CSP1_6_Rokubacteria
14_0929_12_30cm_scaffold_1105_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

26574..27197
DNA (624bp) protein (208aa)
Phosphoglycerate mutase id=3779774 bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphoglycerate mutase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
14_0929_12_30cm_scaffold_1105_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

27259..28563
DNA (1305bp) protein (435aa)
hisZ; ATP phosphoribosyltransferase regulatory subunit id=14625485 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hisZ; ATP phosphoribosyltransferase regulatory subunit
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
14_0929_12_30cm_scaffold_1105_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

28556..29881
DNA (1326bp) protein (442aa)
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase id=3779771 bin=GWA2_Methylomirabilis_73_35 species=Leptospirillum ferrooxidans genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_1105_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(30879..31280)
DNA (402bp) protein (134aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=4020045 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces himastatinicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
Tax=GWA2_Rokubacteria_73_35_curated
14_0929_12_30cm_scaffold_1105_29
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(31309..31857)
DNA (549bp) protein (183aa)
two component LuxR family transcriptional regulator id=14430684 bin=bin3_NC10 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin3_NC10 organism_group=NC10
LuxR family transcriptional regulator
Tax=CSP1_5_NC10
Displaying 29 items

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