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SCN18_10_11_15_R1_B_scaffold_1064

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R1_B_scaffold_1064_1
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..128
DNA (126bp) protein (42aa)
Transposase n=5 Tax=Bacteria RepID=B5TTS4_9BACT
Putative transposase {ECO:0000313|EMBL:BAQ22044.1}; TaxID=615 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia marcescens.;"
transposase IS4 family protein
SCN18_10_11_15_R1_B_scaffold_1064_2
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(145..297)
DNA (153bp) protein (51aa)
Arabinose efflux permease family protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q371_9RHIZ
Arabinose efflux permease family protein
Arabinose efflux permease family protein {ECO:0000313|EMBL:CDI11736.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCN18_10_11_15_R1_B_scaffold_1064_3
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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623..1126
DNA (504bp) protein (168aa)
protein-tyrosine-phosphatase protein (EC:3.1.3.48)
Protein tyrosine phosphatase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X808_OCHA4
Uncharacterized protein {ECO:0000313|EMBL:KGE80299.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCN18_10_11_15_R1_B_scaffold_1064_4
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1123..1761)
DNA (639bp) protein (213aa)
Exopolysaccharide synthesis, ExoD n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ANC2_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:KGE80300.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
exopolysaccharide synthesis, ExoD
SCN18_10_11_15_R1_B_scaffold_1064_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1793..2002)
DNA (210bp) protein (70aa)
UPI0003CE4FB5 related cluster n=1 Tax=unknown RepID=UPI0003CE4FB5
Uncharacterized protein {ECO:0000313|EMBL:KGE80301.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
Hypothetical protein
SCN18_10_11_15_R1_B_scaffold_1064_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2133..2444
DNA (312bp) protein (104aa)
PadR family transcriptional regulator n=1 Tax=Rhizobium mongolense RepID=UPI0003B50A4B
PadR family transcriptional regulator {ECO:0000313|EMBL:KGE80302.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
transcriptional regulator, PadR-like family
SCN18_10_11_15_R1_B_scaffold_1064_7
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2416..3645
DNA (1230bp) protein (410aa)
Chromate transport protein n=1 Tax=Rhizobium sp. RepID=L0NM07_RHISP
Chromate transporter {ECO:0000313|EMBL:KGE80303.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
Chromate transporter, chromate ion transporter family
SCN18_10_11_15_R1_B_scaffold_1064_8
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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3662..4192
DNA (531bp) protein (177aa)
rhodanese family protein (EC:2.8.1.2)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00037BB268
Rhodanese family protein {ECO:0000313|EMBL:KGE80304.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
SCN18_10_11_15_R1_B_scaffold_1064_9
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4716..5933)
DNA (1218bp) protein (406aa)
RepC n=1 Tax=Rhizobium sp. LPU83 RepID=V5RE08_9RHIZ
Replication initiation protein RepC {ECO:0000313|EMBL:KEA03039.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
repC; replication initiation protein RepC
SCN18_10_11_15_R1_B_scaffold_1064_10
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6106..7065)
DNA (960bp) protein (320aa)
Replication protein RepB n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M9K4_RHIL3
repB; replication protein RepB
Replication protein RepB {ECO:0000313|EMBL:CAK02802.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCN18_10_11_15_R1_B_scaffold_1064_11
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7189..8385)
DNA (1197bp) protein (399aa)
Replication protein RepA n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1M9K5_RHIL3
repA; replication protein RepA
Replication protein RepA {ECO:0000313|EMBL:CAK02801.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCN18_10_11_15_R1_B_scaffold_1064_12
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

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8756..9382
DNA (627bp) protein (209aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
N-acyl-L-homoserine lactone synthetase n=1 Tax=Rhizobium sp. CF080 RepID=J3BJS3_9RHIZ
autoinducer synthesis protein
SCN18_10_11_15_R1_B_scaffold_1064_13
SCNPILOT_SOLID_1_TRIM150_Plasmid_7, SCNPILOT_SOLID_1_TRIM150_Plasmid_7, SCNPILOT_SOLID_1_TRIM150_Plasmid_7, SCNPILOT_SOLID_1_TRIM150_Plasmid_7, SCNPILOT_SOLID_1_TRIM150_Plasmid_7, Plasmid-like

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9385..10356
DNA (972bp) protein (324aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Rhizobium sp. CF080 RepID=J2ITU5_9RHIZ
Conjugal transfer protein TrbB {ECO:0000313|EMBL:KGE79934.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
trbB; conjugal transfer protein TrbB
SCN18_10_11_15_R1_B_scaffold_1064_14
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10346..10726
DNA (381bp) protein (127aa)
conjugal transfer protein TrbC n=1 Tax=Rhizobium mongolense RepID=UPI0003B67083
Conjugal transfer protein TrbC {ECO:0000313|EMBL:KGE79935.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
trbC; conjugal transfer protein TrbC
SCN18_10_11_15_R1_B_scaffold_1064_15
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10723..11007
DNA (285bp) protein (95aa)
Riorf128 protein n=1 Tax=Agrobacterium rhizogenes RepID=Q9F5C4_AGRRH
Uncharacterized protein {ECO:0000313|EMBL:KGE79635.1}; Flags: Fragment;; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
trbD; conjugal transfer protein TrbD
SCN18_10_11_15_R1_B_scaffold_1064_16
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11018..13474
DNA (2457bp) protein (819aa)
Conjugal transfer trbE protein n=1 Tax=Sinorhizobium fredii GR64 RepID=F7XZ34_RHIFR
Conjugal transfer trbE protein {ECO:0000313|EMBL:AEI89695.1}; TaxID=882101 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii GR64.;"
trbE; conjugal transfer protein TrbE
SCN18_10_11_15_R1_B_scaffold_1064_17
SCNPILOT_SOLID_1_TRIM150_Plasmid_7, SCNPILOT_SOLID_1_TRIM150_Plasmid_7, SCNPILOT_SOLID_1_TRIM150_Plasmid_7, SCNPILOT_SOLID_1_TRIM150_Plasmid_7, SCNPILOT_SOLID_1_TRIM150_Plasmid_7, Plasmid-like

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13446..14249
DNA (804bp) protein (268aa)
TrbJ n=1 Tax=Rhizobium leguminosarum bv. viciae RepID=Q84G51_RHILV
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KGE79710.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
trbJ; Conjugal transfer protein TrbJ
SCN18_10_11_15_R1_B_scaffold_1064_18
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14243..14419
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI00035C147D
Transfer trbK protein {ECO:0000313|EMBL:KGE79709.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
Hypothetical protein
SCN18_10_11_15_R1_B_scaffold_1064_19
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14424..15602
DNA (1179bp) protein (393aa)
Conjugal transfer protein TrbL n=2 Tax=Rhizobiaceae RepID=L0LT41_RHITR
Conjugal transfer protein TrbL {ECO:0000313|EMBL:KGE79708.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
trbLa; conjugal transfer protein TrbL
SCN18_10_11_15_R1_B_scaffold_1064_20
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15624..15983
DNA (360bp) protein (120aa)
conjugal transfer protein TrbF n=1 Tax=Rhizobium mongolense RepID=UPI0003B61EC5
Conjugal transfer protein TrbF {ECO:0000313|EMBL:KGE79707.1}; Flags: Fragment;; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
trbF; conjugal transfer protein TrbF
Displaying 20 items

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