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SCN18_10_11_15_R1_B_scaffold_161

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Displaying items 1-30 of 136 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R1_B_scaffold_161_trna_3
unknown

Not on your lists

comp(2240..2312)
DNA (73bp)
transferRNA Ala
SCN18_10_11_15_R1_B_scaffold_161_trna_2
unknown

Not on your lists

comp(2340..2413)
DNA (74bp)
transferRNA Ile
SCN18_10_11_15_R1_B_scaffold_161_16S_1
unknown

Not on your lists

comp(2542..4067)
DNA (1526bp)
16S ribosomal RNA (16S rRNA)
SCN18_10_11_15_R1_B_scaffold_161_1
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4657..5559)
DNA (903bp) protein (301aa)
Nicotinate-nucleotide diphosphorylase (Carboxylating) {ECO:0000313|EMBL:KCB45561.1}; EC=2.4.2.19 {ECO:0000313|EMBL:KCB45561.1};; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
nadC; nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Putative nicotinate-nucleotide pyrophosphorylase n=1 Tax=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) RepID=Q7W429_BORPA
SCN18_10_11_15_R1_B_scaffold_161_2
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5670..6599)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4X7B5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EFF77321.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
Predicted NAD regulator in Alphaproteobacteria
SCN18_10_11_15_R1_B_scaffold_161_3
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6607..6828)
DNA (222bp) protein (74aa)
SCN18_10_11_15_R1_B_scaffold_161_4
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6913..8427)
DNA (1515bp) protein (505aa)
dcaH; 3-hydroxy-acyl-CoA dehydrogenase (EC:1.1.1.-)
Hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:CAJ50803.1}; EC=1.1.1.- {ECO:0000313|EMBL:CAJ50803.1};; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (strain 197N).;"
Hydroxyacyl-CoA dehydrogenase n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KU57_BORA1
SCN18_10_11_15_R1_B_scaffold_161_5
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8453..9604)
DNA (1152bp) protein (384aa)
acd3; acyl-CoA dehydrogenase (EC:1.3.99.3)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CAP40698.1}; EC=1.3.99.3 {ECO:0000313|EMBL:CAP40698.1};; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
Acyl-CoA dehydrogenase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HY86_BORPD
SCN18_10_11_15_R1_B_scaffold_161_6
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9616..10257)
DNA (642bp) protein (214aa)
TetR family transcriptional regulator n=2 Tax=Bordetella holmesii RepID=M5NIW5_9BORD
Transcriptional regulator, TetR family {ECO:0000313|EMBL:KCB45352.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
TetR-family transcriptional regulator
SCN18_10_11_15_R1_B_scaffold_161_7
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10353..11108)
DNA (756bp) protein (252aa)
ribE; riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:ADP15932.1}; EC=2.5.1.9 {ECO:0000313|EMBL:ADP15932.1};; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
Riboflavin synthase, alpha subunit n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HPU8_ACHXA
SCN18_10_11_15_R1_B_scaffold_161_8
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11280..11378
DNA (99bp) protein (33aa)
SCN18_10_11_15_R1_B_scaffold_161_9
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11375..11464
DNA (90bp) protein (30aa)
SCN18_10_11_15_R1_B_scaffold_161_10
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11464..13173
DNA (1710bp) protein (570aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
kdpA; K+ transporting ATPase A chain (EC:3.6.3.12)
Potassium-transporting ATPase A chain n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F1Q0_9BURK
SCN18_10_11_15_R1_B_scaffold_161_11
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13194..15320
DNA (2127bp) protein (709aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
kdpB; K+-transporting ATPase B (EC:3.6.3.12)
Potassium-transporting ATPase B chain n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F1P9_9BURK
SCN18_10_11_15_R1_B_scaffold_161_12
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15347..15949
DNA (603bp) protein (201aa)
kdpC; potassium-transporting ATPase subunit C (EC:3.6.3.12)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
Potassium-transporting ATPase C chain n=33 Tax=Bordetella RepID=F4LGG1_BORPC
SCN18_10_11_15_R1_B_scaffold_161_13
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15977..18766
DNA (2790bp) protein (930aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
kdpD; sensor protein KdpD (EC:2.7.13.3)
Sensor protein KdpD n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F1P7_9BURK
SCN18_10_11_15_R1_B_scaffold_161_14
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18739..19431
DNA (693bp) protein (231aa)
Two component response regulator n=1 Tax=Achromobacter xylosoxidans C54 RepID=E5UE95_ALCXX
DNA-binding response regulator KdpE
Transcriptional regulator {ECO:0000313|EMBL:AIR50224.1}; Two component response regulator {ECO:0000313|EMBL:EFV82792.1}; TaxID=562971 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans C54.;"
SCN18_10_11_15_R1_B_scaffold_161_15
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19565..20782
DNA (1218bp) protein (406aa)
pleD; response regulator PleD (EC:2.7.7.65)
Response regulator PleD {ECO:0000313|EMBL:AEI75790.1}; EC=2.7.7.65 {ECO:0000313|EMBL:AEI75790.1};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
Response regulator PleD n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0EUS9_CUPNN
SCN18_10_11_15_R1_B_scaffold_161_16
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20944..21267
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HRL7_ACHXA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP19636.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCN18_10_11_15_R1_B_scaffold_161_17
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21318..22121)
DNA (804bp) protein (268aa)
Transcriptional regulator protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIG1_9BURK
Transcriptional regulator protein {ECO:0000313|EMBL:EIK89001.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
transcription regulator protein
SCN18_10_11_15_R1_B_scaffold_161_18
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22305..22784
DNA (480bp) protein (160aa)
Flavoprotein oxidoreductase n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIG0_9BURK
Flavoprotein oxidoreductase {ECO:0000313|EMBL:EIK89000.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
flavoprotein oxidoreductase
SCN18_10_11_15_R1_B_scaffold_161_19
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22807..23154
DNA (348bp) protein (116aa)
Glyoxalase protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIF9_9BURK
Glyoxalase protein {ECO:0000313|EMBL:EIK88999.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
glyoxalase
SCN18_10_11_15_R1_B_scaffold_161_20
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23219..24247
DNA (1029bp) protein (343aa)
Luciferase-like protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIF8_9BURK
Luciferase-like protein {ECO:0000313|EMBL:EIK88998.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
luciferase-like monooxygenase protein
SCN18_10_11_15_R1_B_scaffold_161_21
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24252..25097
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI0003475CF1
Alpha/beta hydrolase fold family protein {ECO:0000313|EMBL:KKB66463.1}; TaxID=1249470 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei MSHR1079.;"
alpha/beta hydrolase fold family protein
SCN18_10_11_15_R1_B_scaffold_161_22
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25130..26110
DNA (981bp) protein (327aa)
Extra-cytoplasmic solute receptor protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIF7_9BURK
Extra-cytoplasmic solute receptor protein {ECO:0000313|EMBL:EIK88997.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
bug; ABC transporter substrate-binding protein
SCN18_10_11_15_R1_B_scaffold_161_23
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26139..27410)
DNA (1272bp) protein (424aa)
Transporter, putative n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4Y042_ALCXX
transporter, putative
Transporter, putative {ECO:0000313|EMBL:CCH10224.1}; TaxID=1167634 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans NH44784-1996.;"
SCN18_10_11_15_R1_B_scaffold_161_24
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27507..27842)
DNA (336bp) protein (112aa)
multidrug transporter n=1 Tax=Janthinobacterium lividum RepID=UPI000288DB93
small Multidrug Resistance family protein
Small Multidrug Resistance family protein {ECO:0000313|EMBL:CDG83491.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
SCN18_10_11_15_R1_B_scaffold_161_25
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27859..29910)
DNA (2052bp) protein (684aa)
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Burkholderia vietnamiensis AU4i RepID=U2G920_BURVI
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:ERJ39555.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
diguanylate cyclase/phosphodiesterase
SCN18_10_11_15_R1_B_scaffold_161_26
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30169..30387
DNA (219bp) protein (73aa)
SCN18_10_11_15_R1_B_scaffold_161_27
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30588..31574
DNA (987bp) protein (329aa)
Bordetella petrii strain DSM 12804, complete genome n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9HYQ1_BORPD
Putative permease {ECO:0000313|EMBL:KCB37863.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
hypothetical protein
Displaying items 1-30 of 136 in total

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