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SCN18_10_11_15_R1_B_scaffold_1428

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R1_B_scaffold_1428_1
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1064)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036E9EC0
formate dehydrogenase subunit beta
Formate dehydrogenase subunit beta {ECO:0000313|EMBL:AHB49083.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
SCN18_10_11_15_R1_B_scaffold_1428_2
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1061..1528)
DNA (468bp) protein (156aa)
NADH dehydrogenase (Ubiquinone) 24 kDa subunit n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZZ00_STAND
NADH dehydrogenase (ubiquinone) 24 kDa subunit
NADH dehydrogenase (Ubiquinone) 24 kDa subunit {ECO:0000313|EMBL:ADH91119.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCN18_10_11_15_R1_B_scaffold_1428_3
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1741..2184)
DNA (444bp) protein (148aa)
Transcriptional regulator, LysR family n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JFP5_HYPSM
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CCB64211.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCN18_10_11_15_R1_B_scaffold_1428_4
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2257..2655)
DNA (399bp) protein (133aa)
Transcriptional regulator, LysR family n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JSG6_HYPDA
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADJ24260.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCN18_10_11_15_R1_B_scaffold_1428_5
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2752..6354)
DNA (3603bp) protein (1201aa)
5-oxoprolinase {ECO:0000313|EMBL:BAQ67676.1}; EC=3.5.2.9 {ECO:0000313|EMBL:BAQ67676.1};; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
5-oxoprolinase n=1 Tax=Loktanella hongkongensis RepID=UPI0003686768
5-oxoprolinase
SCN18_10_11_15_R1_B_scaffold_1428_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6500..7786)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D6M1_9RHIZ
membrane protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_10_11_15_R1_B_scaffold_1428_7
CN-SCN_Lautropia_15x, CN-SCN_Lautropia_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7792..8499)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GUZ4_PUSST
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_10_11_15_R1_B_scaffold_1428_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8555..9610)
DNA (1056bp) protein (352aa)
Putative transport protein n=1 Tax=Roseovarius sp. 217 RepID=A3W5T9_9RHOB
dctP3; TRAP transporter subunit DctP
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_10_11_15_R1_B_scaffold_1428_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9658..10470)
DNA (813bp) protein (271aa)
UPI0003C7E8D9 related cluster n=1 Tax=unknown RepID=UPI0003C7E8D9
hypothetical protein
UPF0317 protein SAR11_0660 {ECO:0000255|HAMAP-Rule:MF_01830}; TaxID=335992 species="Bacteria; Proteobacteria; Alphaproteobacteria; Pelagibacterales; Pelagibacteraceae; Candidatus Pelagibacter.;" source="Pelagibacter ubique (strain HTCC1062).;"
SCN18_10_11_15_R1_B_scaffold_1428_10
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10750..11622
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEW6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38125.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
amidohydrolase 2
SCN18_10_11_15_R1_B_scaffold_1428_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11626..12033)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium HIMB11 RepID=U4UXJ0_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:ERL97657.1}; TaxID=1366046 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.;" source="Rhodobacteraceae bacterium HIMB11.;"
hypothetical protein
SCN18_10_11_15_R1_B_scaffold_1428_12
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12117..12506
DNA (390bp) protein (130aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1144323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM17.;"
Alkylhydroperoxidase n=1 Tax=Pseudomonas chlororaphis subsp. aurantiaca PB-St2 RepID=V8DF76_9PSED
alkylhydroperoxidase
Displaying 12 items

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