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SCN18_10_11_15_R1_P_scaffold_185

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Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R1_P_scaffold_185_1
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(215..1096)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Acinetobacter calcoaceticus NIPH 13 RepID=N8PJH2_ACICA
Uncharacterized protein {ECO:0000313|EMBL:ENW74563.1}; TaxID=1217629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter baumannii NIPH 80.;"
hypothetical protein
SCN18_10_11_15_R1_P_scaffold_185_2
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1232..2404)
DNA (1173bp) protein (391aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00035C09FE
LuxR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated
SCN18_10_11_15_R1_P_scaffold_185_3
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2532..3062
DNA (531bp) protein (177aa)
SCN18_10_11_15_R1_P_scaffold_185_4
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3173..4753
DNA (1581bp) protein (527aa)
Uncharacterized protein n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SA22_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU23528.1}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
Tfp pilus assembly protein PilF
SCN18_10_11_15_R1_P_scaffold_185_5
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4987..7896)
DNA (2910bp) protein (970aa)
Diguanylate cyclase/phosphodiesterase id=2533312 bin=GWF1_Flavobacteria_32_7 species=Pedobacter sp. BAL39 genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF1_Flavobacteria_32_7 organism_group=Bacteroidetes
signal transduction histidine kinase LytS
Tax=GWA2_Bacteroidetes_31_9_curated
SCN18_10_11_15_R1_P_scaffold_185_6
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7898..10756)
DNA (2859bp) protein (953aa)
Two-component system sensor histidine kinase (EC:2.7.13.3)
Sensor histidine kinase n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GPY9_9SPHI
Sensor histidine kinase {ECO:0000313|EMBL:EOR93907.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
SCN18_10_11_15_R1_P_scaffold_185_7
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10766..11497)
DNA (732bp) protein (244aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20) RepID=F0RFG6_CELLC
LytTR family two component transcriptional regulator
LytTR family two component transcriptional regulator {ECO:0000313|EMBL:EWH10005.1}; TaxID=1328323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulophaga geojensis KL-A.;"
SCN18_10_11_15_R1_P_scaffold_185_8
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11621..11908)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000376E853
Contig37, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77361.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein
SCN18_10_11_15_R1_P_scaffold_185_9
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12028..12819
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R4K5_OWEHD
Uncharacterized protein {ECO:0000313|EMBL:KIC61932.1}; TaxID=363331 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium taiwanense.;"
hypothetical protein
SCN18_10_11_15_R1_P_scaffold_185_10
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13074..13961
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Echinicola pacifica RepID=UPI0003751805
Transcriptional regulator {ECO:0000313|EMBL:KGO78872.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
LysR family transcriptional regulator
SCN18_10_11_15_R1_P_scaffold_185_11
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14040..15014
DNA (975bp) protein (325aa)
TPR repeat n=1 Tax=Pedobacter sp. BAL39 RepID=A6EJ17_9SPHI
TPR repeat {ECO:0000313|EMBL:EDM34531.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
hypothetical protein
SCN18_10_11_15_R1_P_scaffold_185_trna_1
unknown

Not on your lists

15114..15188
DNA (75bp)
transferRNA Val
SCN18_10_11_15_R1_P_scaffold_185_12
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15301..16119
DNA (819bp) protein (273aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TEC8_NIAKG
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000313|EMBL:GAO43320.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
SCN18_10_11_15_R1_P_scaffold_185_13
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16147..17310
DNA (1164bp) protein (388aa)
MscS Mechanosensitive ion channel n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XXL4_PEDHD
mechanosensitive ion channel MscS
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:ACU02268.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCN18_10_11_15_R1_P_scaffold_185_14
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17509..18057
DNA (549bp) protein (183aa)
SCN18_10_11_15_R1_P_scaffold_185_15
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18273..21050
DNA (2778bp) protein (926aa)
SCN18_10_11_15_R1_P_scaffold_185_16
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21242..21511
DNA (270bp) protein (90aa)
SCN18_10_11_15_R1_P_scaffold_185_17
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21612..22175)
DNA (564bp) protein (188aa)
Transcription termination/antitermination protein NusG n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUF8_CHIPD
NusG antitermination factor
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCN18_10_11_15_R1_P_scaffold_185_18
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22187..22384)
DNA (198bp) protein (66aa)
Protein translocase subunit SecE n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUF7_CHIPD
preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCN18_10_11_15_R1_P_scaffold_185_trna_6
unknown

Not on your lists

comp(22486..22556)
DNA (71bp)
transferRNA Trp
SCN18_10_11_15_R1_P_scaffold_185_19
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22654..23727)
DNA (1074bp) protein (358aa)
Aminotransferase class V n=1 Tax=Niabella soli DSM 19437 RepID=H1NTJ8_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF17855.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCN18_10_11_15_R1_P_scaffold_185_20
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23854..25041)
DNA (1188bp) protein (396aa)
Elongation factor Tu n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUF6_CHIPD
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCN18_10_11_15_R1_P_scaffold_185_trna_5
unknown

Not on your lists

comp(25313..25384)
DNA (72bp)
transferRNA Thr
SCN18_10_11_15_R1_P_scaffold_185_trna_4
unknown

Not on your lists

comp(25395..25467)
DNA (73bp)
transferRNA Gly
SCN18_10_11_15_R1_P_scaffold_185_trna_3
unknown

Not on your lists

comp(25486..25568)
DNA (83bp)
transferRNA Tyr
SCN18_10_11_15_R1_P_scaffold_185_trna_2
unknown

Not on your lists

comp(25585..25657)
DNA (73bp)
transferRNA Thr
SCN18_10_11_15_R1_P_scaffold_185_21
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25798..26328)
DNA (531bp) protein (177aa)
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
SCN18_10_11_15_R1_P_scaffold_185_22
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26415..27860)
DNA (1446bp) protein (482aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL06_NIAKG
NAD(P)(+) transhydrogenase
SCN18_10_11_15_R1_P_scaffold_185_23
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27870..28199)
DNA (330bp) protein (110aa)
Pyridine nucleotide transhydrogenase subunit alpha n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PKY4_CHIPD
pyridine nucleotide transhydrogenase subunit alpha
Pyridine nucleotide transhydrogenase subunit alpha {ECO:0000313|EMBL:ACU63894.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCN18_10_11_15_R1_P_scaffold_185_24
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28208..29344)
DNA (1137bp) protein (379aa)
NAD(P)(+) transhydrogenase (AB-specific) n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL08_NIAKG
Alanine dehydrogenase/PNT, C-terminal domain protein {ECO:0000313|EMBL:AIA16658.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
NAD(P)(+) transhydrogenase
Displaying items 1-30 of 54 in total

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