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SCN18_10_11_15_R3_B_scaffold_2707

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R3_B_scaffold_2707_1
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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1..2349
DNA (2349bp) protein (783aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
DNA polymerase III subunit alpha n=1 Tax=Thiobacillus thioparus RepID=UPI00037FCB3D
Tax=GWE1_Thiobacillus_62_9_curated
SCN18_10_11_15_R3_B_scaffold_2707_2
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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2717..3616
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI00037151B8
Membrane protein {ECO:0000313|EMBL:EWY37468.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
conserved membrane protein of unknown function
SCN18_10_11_15_R3_B_scaffold_2707_3
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3993..4280)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00035D6410
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACX96920.1}; TaxID=555778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Halothiobacillaceae; Halothiobacillus.;" source="Halothiobacillus neapolitanus (strain ATCC 23641 / c2) (Thiobacillus; neapolitanus).;"
SCN18_10_11_15_R3_B_scaffold_2707_4
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4277..4615)
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI000374998E
Protein containing DUF891 {ECO:0000313|EMBL:EQD75093.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCN18_10_11_15_R3_B_scaffold_2707_5
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4642..4785)
DNA (144bp) protein (48aa)
hypothetical protein, partial id=12495555 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
SCN18_10_11_15_R3_B_scaffold_2707_6
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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4825..5139
DNA (315bp) protein (105aa)
putative transcriptional regulator id=12495554 bin=THIO_HI species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
relE; transcription repressor protein
Putative transcriptional regulator {ECO:0000313|EMBL:AGK18646.1}; TaxID=1283331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii CA6.;"
SCN18_10_11_15_R3_B_scaffold_2707_7
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5132..5368
DNA (237bp) protein (79aa)
Transcriptional regulator with Fis-type helix-turn-helix motif id=12495553 bin=THIO_HI species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
XRE family transcriptional regulator
XRE family transcriptional regulator {ECO:0000313|EMBL:AET89277.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
SCN18_10_11_15_R3_B_scaffold_2707_8
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5549..5836
DNA (288bp) protein (96aa)
XRE family transcriptional regulator id=12495552 bin=THIO_HI species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
XRE family transcriptional regulator {ECO:0000313|EMBL:KHL68640.1}; TaxID=706570 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Serpens.;" source="Serpens flexibilis.;"
hypothetical protein
SCN18_10_11_15_R3_B_scaffold_2707_9
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5848..6015)
DNA (168bp) protein (56aa)
RHS repeat-associated core domain-containing protein id=12495551 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
RHS repeat-associated core domain-containing protein
RHS repeat-associated core domain protein {ECO:0000313|EMBL:AEG00906.1}; TaxID=857087 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas methanica (strain MC09).;"
SCN18_10_11_15_R3_B_scaffold_2707_trna_1
unknown

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6122..6195
DNA (74bp)
transferRNA Val
SCN18_10_11_15_R3_B_scaffold_2707_10
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6377..6688)
DNA (312bp) protein (104aa)
phaG; monovalent cation/H+ antiporter subunit G; K05564 multicomponent K+:H+ antiporter subunit G id=12495550 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phaG; monovalent cation/H+ antiporter subunit G
Probable potassium efflux system protein {ECO:0000313|EMBL:CAI06407.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCN18_10_11_15_R3_B_scaffold_2707_11
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6685..6966)
DNA (282bp) protein (94aa)
phaF; monovalent cation/H+ antiporter subunit F; K05563 multicomponent K+:H+ antiporter subunit F id=12495549 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phaF; monovalent cation/H+ antiporter subunit F
Protein F of Na+/H+ antiporter of putative pH adaptation potassium efflux system {ECO:0000313|EMBL:CAI06408.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCN18_10_11_15_R3_B_scaffold_2707_12
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6963..7451)
DNA (489bp) protein (163aa)
phaE; monovalent cation/H+ antiporter subunit E; K05562 multicomponent K+:H+ antiporter subunit E id=12495548 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phaE; monovalent cation/H+ antiporter subunit E
Potential Na+/H+ antiporter subunit {ECO:0000313|EMBL:CAI06409.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCN18_10_11_15_R3_B_scaffold_2707_13
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7448..9067)
DNA (1620bp) protein (540aa)
phaD; monovalent cation/H+ antiporter subunit D; K05561 multicomponent K+:H+ antiporter subunit D id=12495547 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phaD; monovalent cation/H+ antiporter subunit D
pH adaptation potassium efflux protein {ECO:0000313|EMBL:CAI06410.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
SCN18_10_11_15_R3_B_scaffold_2707_14
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9110..9457)
DNA (348bp) protein (116aa)
phaC; monovalent cation/H+ antiporter subunit C; K05560 multicomponent K+:H+ antiporter subunit C id=12495546 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Monovalent cation/H+ antiporter subunit C {ECO:0000313|EMBL:KIO48425.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
phaC; monovalent cation/H+ antiporter subunit C
SCN18_10_11_15_R3_B_scaffold_2707_15
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9457..12351)
DNA (2895bp) protein (965aa)
phaA; monovalent cation/H+ antiporter subunit A; K05559 multicomponent K+:H+ antiporter subunit A id=12495545 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
pH adaptation potassium efflux protein {ECO:0000313|EMBL:CAI06412.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
phaA; monovalent cation/H+ antiporter subunit A
Displaying 16 items

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