ggKbase home page

SCN18_10_11_15_R3_B_scaffold_1266

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R3_B_scaffold_1266_1
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..80
DNA (78bp) protein (26aa)
SCN18_10_11_15_R3_B_scaffold_1266_2
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61..1107
DNA (1047bp) protein (349aa)
two-component system sensor ATPase; K08082 two-component system, LytT family, sensor histidine kinase AlgZ [EC:2.7.13.3] id=12494528 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
two-component system sensor ATPase
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1266_3
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1064..1810
DNA (747bp) protein (249aa)
LytR/AlgR family transcriptional regulator; K08083 two-component system, LytT family, response regulator AlgR id=12494527 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
LytR/AlgR family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1266_4
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2229..2855
DNA (627bp) protein (209aa)
hypothetical protein; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13] id=12494526 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1266_5
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3187..5361)
DNA (2175bp) protein (725aa)
metH; B12-dependent methionine synthase (EC:2.1.1.13)
methionine synthase n=1 Tax=Thiobacillus denitrificans RepID=UPI00037D6956
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCN18_10_11_15_R3_B_scaffold_1266_6
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5348..6697)
DNA (1350bp) protein (450aa)
metH; B12-dependent methionine synthase (EC:2.1.1.13)
methionine synthase n=1 Tax=Thiobacillus thioparus RepID=UPI0003825531
5-methyltetrahydrofolate--homocysteine methyltransferase {ECO:0000313|EMBL:AAZ96187.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCN18_10_11_15_R3_B_scaffold_1266_7
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6901..9627
DNA (2727bp) protein (909aa)
putative TPR repeat:Tetratricopeptide TPR 4 id=12495589 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
putative TPR repeat:Tetratricopeptide TPR 4
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1266_8
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9805..10680
DNA (876bp) protein (292aa)
hypothetical protein id=12495590 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1266_9
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10788..11174
DNA (387bp) protein (129aa)
rhodanese-like protein id=12495591 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
rhodanese-like protein
Tax=GWE1_Thiobacillus_62_9_curated
SCN18_10_11_15_R3_B_scaffold_1266_10
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11184..12215)
DNA (1032bp) protein (344aa)
hypothetical protein id=12495592 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1266_11
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12212..13702)
DNA (1491bp) protein (497aa)
Fis family transcriptional regulator n=1 Tax=Thiobacillus thioparus RepID=UPI00035D2536
Mg chelatase-like protein
Mg chelatase-related protein {ECO:0000313|EMBL:AAZ96190.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCN18_10_11_15_R3_B_scaffold_1266_12
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13704..13961)
DNA (258bp) protein (86aa)
hypothetical protein; K09806 hypothetical protein id=12495594 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1266_13
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14211..14999
DNA (789bp) protein (263aa)
hypothetical protein id=12495595 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1266_14
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15069..15407
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II; K04752 nitrogen regulatory protein P-II 2 id=12495596 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
nitrogen regulatory protein P-II
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
SCN18_10_11_15_R3_B_scaffold_1266_15
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15418..16773
DNA (1356bp) protein (452aa)
amtB1; ammonium transporter; K03320 ammonium transporter, Amt family id=12495597 bin=THIO_HI species=Pseudomonas stutzeri genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Ammonia channel protein {ECO:0000313|EMBL:GAO36914.1}; TaxID=1632857 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella sp. T08.;"
amtB1; ammonium transporter
SCN18_10_11_15_R3_B_scaffold_1266_16
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16874..20077)
DNA (3204bp) protein (1068aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000378C717
transmembrane protein
Probable transmembrane protein {ECO:0000313|EMBL:AAZ98415.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
SCN18_10_11_15_R3_B_scaffold_1266_17
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20070..21038)
DNA (969bp) protein (323aa)
coproporphyrinogen III oxidase (EC:1.3.3.3); K00228 coproporphyrinogen III oxidase [EC:1.3.3.3] id=12495600 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
coproporphyrinogen III oxidase (EC:1.3.3.3)
Tax=GWE1_Thiobacillus_62_9_curated
SCN18_10_11_15_R3_B_scaffold_1266_18
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21038..21556)
DNA (519bp) protein (173aa)
translation factor SUA5; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein id=12495601 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
translation factor SUA5
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1266_19
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21575..22258)
DNA (684bp) protein (228aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] id=12495602 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1266_20
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22922..23008)
DNA (87bp) protein (29aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3 3.5.4.10)
purine biosynthesis protein purH n=1 Tax=Thiobacillus denitrificans RepID=UPI0003623B84
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying 20 items

View Taxonomy