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SCN18_10_11_15_R3_B_scaffold_1576

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R3_B_scaffold_1576_1
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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3..221
DNA (219bp) protein (73aa)
Integrase, catalytic region (Fragment) n=1 Tax=mine drainage metagenome RepID=T1AAL6_9ZZZZ
integrase family protein
Tax=RIFCSPHIGHO2_02_FULL_Methylophilales_57_10_curated
SCN18_10_11_15_R3_B_scaffold_1576_2
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(484..1563)
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21UK4_RHOFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD70549.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
SCN18_10_11_15_R3_B_scaffold_1576_3
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1624..1893)
DNA (270bp) protein (90aa)
SCN18_10_11_15_R3_B_scaffold_1576_4
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1912..2244)
DNA (333bp) protein (111aa)
SCN18_10_11_15_R3_B_scaffold_1576_5
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2582..4207)
DNA (1626bp) protein (542aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VKV2_POLNA
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCN18_10_11_15_R3_B_scaffold_1576_6
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4204..5043)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HPP4_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU44983.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_10_11_15_R3_B_scaffold_1576_7
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5055..5291)
DNA (237bp) protein (79aa)
DNA-binding protein, excisionase family n=1 Tax=Methylomicrobium album BG8 RepID=H8GLQ4_METAL
Helix-turn-helix domain protein {ECO:0000313|EMBL:EXI84590.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hypothetical protein
SCN18_10_11_15_R3_B_scaffold_1576_8
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5396..5770)
DNA (375bp) protein (125aa)
SCN18_10_11_15_R3_B_scaffold_1576_9
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5767..7014)
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI0003702682
Site-specific tyrosine recombinase XerC {ECO:0000313|EMBL:EXI84702.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
recombinase XerD
SCN18_10_11_15_R3_B_scaffold_1576_10
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7392..9224)
DNA (1833bp) protein (611aa)
mnmC, trmC, yfcK; 5-methylaminomethyl-2-thiouridine methyltransferase; K15461 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-] id=12494664 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000255|HAMAP-Rule:MF_01102}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000255|HAMAP-Rule:MF_01102};; Includes:; tRNA (mnm(5)s(2)U34)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01102}; EC=2.1.1.61 {ECO:0000255|HAMAP-Rule:MF_01102};; Includes:; FAD-dependent cmnm(5)s(2)U34 oxidoreductase {ECO:0000255|HAMAP-Rule:MF_01102}; EC=1.5.-.- {ECO:0000255|HAMAP-Rule:MF_01102};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
mnmC; 5-methylaminomethyl-2-thiouridine methyltransferase
SCN18_10_11_15_R3_B_scaffold_1576_11
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9409..9867)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Thiobacillus thioparus RepID=UPI000381CA9C
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1576_12
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10040..10945
DNA (906bp) protein (302aa)
methylated-DNA--protein-cysteine methyltransferase; K10778 AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63] id=12494662 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ada; methylated-DNA-[protein]-cysteine S-methyltransferase (EC:2.1.1.63)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1576_13
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11054..11989)
DNA (936bp) protein (312aa)
heterodisulfide reductase, B subunit (EC:1.8.98.1); K03389 heterodisulfide reductase subunit B [EC:1.8.98.1] id=12494661 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
heterodisulfide reductase, B subunit (EC:1.8.98.1)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1576_14
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12000..12632)
DNA (633bp) protein (211aa)
heterodisulfide reductase subunit C (EC:1.8.98.1); K03390 heterodisulfide reductase subunit C [EC:1.8.98.1] id=12494660 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
heterodisulfide reductase subunit C (EC:1.8.98.1)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1576_15
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12646..12807)
DNA (162bp) protein (54aa)
heterodisulfide reductase subunit A (EC:1.8.98.1); K03388 heterodisulfide reductase subunit A [EC:1.8.98.1] id=12494659 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
heterodisulfide reductase subunit A (EC:1.8.98.1)
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
SCN18_10_11_15_R3_B_scaffold_1576_16
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12783..13211)
DNA (429bp) protein (143aa)
heterodisulfide reductase subunit A (EC:1.8.98.1)
heterodisulfide reductase n=1 Tax=Thiobacillus denitrificans RepID=UPI000377FC61
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
Displaying 16 items

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