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SCN18_26_2_15_R3_P_scaffold_280_35_rev_final

Search features with annotation key words

Displaying items 1-30 of 532 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_1
unknown

Not on your lists

comp(3..74)
DNA (72bp) protein (24aa)

This feature has no annotations

SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_2
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(98..364)
DNA (267bp) protein (89aa)
Transposase IS3/IS911 family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VB39_9BRAD
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:EFI49945.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
transposase
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_3
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(395..3247)
DNA (2853bp) protein (951aa)
UPI0003CE1C63 related cluster n=1 Tax=unknown RepID=UPI0003CE1C63
Uncharacterized protein {ECO:0000313|EMBL:ESY81791.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_4
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3253..6486)
DNA (3234bp) protein (1078aa)
UPI0003CE2783 related cluster n=1 Tax=unknown RepID=UPI0003CE2783
Helicase {ECO:0000313|EMBL:ESY81792.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_trna_9
unknown

Not on your lists

comp(7081..7154)
DNA (74bp)
transferRNA Arg
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7291..8802)
DNA (1512bp) protein (504aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Histidine kinase n=2 Tax=Oligotropha carboxidovorans RepID=B6JJN5_OLICO
histidine kinase
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_6
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9187..9321
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=6 Tax=Bradyrhizobiaceae RepID=RL34_BRASO
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_7
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9351..9734
DNA (384bp) protein (128aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Ribonuclease P protein component n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6R8_9BRAD
ribonuclease P protein
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9748..11577
DNA (1830bp) protein (610aa)
Membrane protein insertase YidC n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNQ8_AFIFE
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
oxaA; inner membrane protein OxaA
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11645..12310
DNA (666bp) protein (222aa)
GTP-binding protein YsxC n=1 Tax=Afipia birgiae RepID=UPI0002E4CAA2
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
engB; ribosome biogenesis GTP-binding protein YsxC
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12310..12687
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P8R6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37189.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_11
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12758..13657
DNA (900bp) protein (300aa)
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase n=2 Tax=Bradyrhizobiaceae RepID=F7QFM9_9BRAD
Acetylglutamate kinase {ECO:0000313|EMBL:EKS33557.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13803..14825
DNA (1023bp) protein (341aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21B52_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD86384.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_13
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14908..15618
DNA (711bp) protein (237aa)
Pyrimidine 5'-nucleotidase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NYI2_9BRAD
Pyrimidine 5'-nucleotidase {ECO:0000313|EMBL:EKS33559.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
pyrimidine 5-nucleotidase
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15753..16598
DNA (846bp) protein (282aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
dapD; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase DapD (EC:2.3.1.117)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNP9_AFIFE
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_15
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16602..17759
DNA (1158bp) protein (386aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082783};; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase {ECO:0000256|HAMAP-Rule:MF_01690}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
dapE; succinyl-diaminopimelate desuccinylase (EC:3.5.1.18)
Succinyl-diaminopimelate desuccinylase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NTH6_AFIFE
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17770..18330
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQP2_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30729.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
putative nucleoside phosphorylase
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18475..19212)
DNA (738bp) protein (246aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6T1_9BRAD
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_18
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19219..19716)
DNA (498bp) protein (166aa)
N-acetyltransferase GCN5 n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BU76_9RHIZ
GCN5 family acetyltransferase {ECO:0000313|EMBL:ETR78257.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
N-acetyltransferase
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_19
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19713..20714)
DNA (1002bp) protein (334aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
fmt; methionyl-tRNA formyltransferase Fmt (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QG70_9BRAD
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20795..21367)
DNA (573bp) protein (191aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
def; peptide deformylase Def (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4R0_9BRAD
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21482..22696
DNA (1215bp) protein (405aa)
DNA recombinase n=1 Tax=Afipia birgiae RepID=UPI0003670AE9
Uncharacterized protein {ECO:0000313|EMBL:EKS33566.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22888..24276
DNA (1389bp) protein (463aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21B95_RHOPB
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABD86341.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24296..24736)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3T0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37202.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_24
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24757..25362)
DNA (606bp) protein (202aa)
Recombination protein RecR n=2 Tax=Oligotropha carboxidovorans RepID=RECR_OLICO
recR; recombination protein RecR
Recombination protein RecR {ECO:0000255|HAMAP-Rule:MF_00017}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_25
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25362..25682)
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002F9B9A4
Nucleoid-associated protein UP10_30100 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25705..27576)
DNA (1872bp) protein (624aa)
DNA polymerase III, subunit gamma and tau n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNM7_AFIFE
DNA polymerase III, subunit gamma and tau {ECO:0000313|EMBL:EKS30721.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
DNA polymerase III subunits gamma/tau
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_27
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27999..28415
DNA (417bp) protein (139aa)
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase n=1 Tax=Rhodovulum sp. PH10 RepID=J6LCE5_9RHOB
Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase {ECO:0000313|EMBL:EJW10938.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
histidine triad (HIT) protein
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_28
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28612..29559
DNA (948bp) protein (316aa)
carbohydrate kinase, PfkB family protein (EC:2.7.1.-)
Carbohydrate kinase, PfkB family protein {ECO:0000313|EMBL:AEI05317.1}; EC=2.7.1.- {ECO:0000313|EMBL:AEI05317.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Carbohydrate kinase, PfkB family protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJQ5_OLICO
SCN18_26_2_15_R3_P_scaffold_280_35_rev_final_29
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29643..30155
DNA (513bp) protein (171aa)
Transcriptional regulator, AsnC family n=2 Tax=Bradyrhizobiaceae RepID=F7QG83_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS33577.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
glutamate uptake regulatory protein
Displaying items 1-30 of 532 in total

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