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SCN18_10_11_15_R3_B_scaffold_131_rev_final

Search features with annotation key words

Displaying items 1-30 of 365 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R3_B_scaffold_131_rev_final_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..695)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NE78_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28922.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ABC transporter
SCN18_10_11_15_R3_B_scaffold_131_rev_final_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(724..1494)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NNP5_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29150.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
enoyl-CoA hydratase
SCN18_10_11_15_R3_B_scaffold_131_rev_final_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1556..3688)
DNA (2133bp) protein (711aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJ81_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29151.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
acyl-CoA synthetase
SCN18_10_11_15_R3_B_scaffold_131_rev_final_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3779..5002)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NEW3_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29152.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
glutaryl-CoA dehydrogenase
SCN18_10_11_15_R3_B_scaffold_131_rev_final_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5056..6090)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NSF8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29153.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ABC transporter periplasmic substrate-binding protein
SCN18_10_11_15_R3_B_scaffold_131_rev_final_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6155..7168)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NL26_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29154.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
periplasmic subtsrate-binding protein
SCN18_10_11_15_R3_B_scaffold_131_rev_final_7
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7275..8477)
DNA (1203bp) protein (401aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8R0_9BRAD
3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase {ECO:0000313|EMBL:CEG09057.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCN18_10_11_15_R3_B_scaffold_131_rev_final_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8514..10037)
DNA (1524bp) protein (508aa)
paaH; 3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8Q9_9BRAD
3-hydroxyadipyl-CoA dehydrogenase {ECO:0000313|EMBL:CEG09058.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCN18_10_11_15_R3_B_scaffold_131_rev_final_9
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10285..11181
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8Q8_9BRAD
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EFI50546.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
LysR family transcriptional regulator
SCN18_10_11_15_R3_B_scaffold_131_rev_final_10
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11468..12748
DNA (1281bp) protein (427aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BQ55_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05864.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_10_11_15_R3_B_scaffold_131_rev_final_trna_1
unknown

Not on your lists

12847..12919
DNA (73bp)
transferRNA Met
SCN18_10_11_15_R3_B_scaffold_131_rev_final_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13032..13319
DNA (288bp) protein (96aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IT94_RHOP2
putative 6-pyruvoyl tetrahydropterin synthase
SCN18_10_11_15_R3_B_scaffold_131_rev_final_12
unknown

Not on your lists

comp(13435..13572)
DNA (138bp) protein (46aa)

This feature has no annotations

SCN18_10_11_15_R3_B_scaffold_131_rev_final_13
unknown

Not on your lists

comp(13582..13752)
DNA (171bp) protein (57aa)

This feature has no annotations

SCN18_10_11_15_R3_B_scaffold_131_rev_final_14
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14650..16098
DNA (1449bp) protein (483aa)
UPI0003CFA841 related cluster n=1 Tax=unknown RepID=UPI0003CFA841
Uncharacterized protein {ECO:0000313|EMBL:KEC80212.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
AraC family transcriptional regulator
SCN18_10_11_15_R3_B_scaffold_131_rev_final_15
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16557..17783
DNA (1227bp) protein (409aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJL5_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05354.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_10_11_15_R3_B_scaffold_131_rev_final_16
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17796..19772
DNA (1977bp) protein (659aa)
GGDEF/EAL domain protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJL4_OLICO
diguanylate cyclase
GGDEF/EAL domain protein {ECO:0000313|EMBL:AEI05355.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_10_11_15_R3_B_scaffold_131_rev_final_17
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19889..20458)
DNA (570bp) protein (190aa)
Cytochrome c class I n=1 Tax=Afipia sp. 1NLS2 RepID=D6V770_9BRAD
Cytochrome c class I {ECO:0000313|EMBL:EFI51080.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
cytochrome c class I
SCN18_10_11_15_R3_B_scaffold_131_rev_final_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20439..21734)
DNA (1296bp) protein (432aa)
Oxidoreductase molybdopterin binding n=1 Tax=Afipia sp. 1NLS2 RepID=D6V769_9BRAD
Oxidoreductase molybdopterin binding domain protein {ECO:0000313|EMBL:CEG09446.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
molybdopterin binding oxidoreductase
SCN18_10_11_15_R3_B_scaffold_131_rev_final_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21857..22870
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NIE0_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS28821.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
LysR family transcriptional regulator
SCN18_10_11_15_R3_B_scaffold_131_rev_final_20
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22952..23164
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PUP7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW13397.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCN18_10_11_15_R3_B_scaffold_131_rev_final_21
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23183..24421)
DNA (1239bp) protein (413aa)
Putative oxalate/formate antiporter n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QRM3_9BRAD
Putative oxalate/formate antiporter {ECO:0000313|EMBL:EGP06234.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
major facilitator transporter
SCN18_10_11_15_R3_B_scaffold_131_rev_final_22
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24628..26859
DNA (2232bp) protein (744aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEJ7_9BRAD
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:EKS36753.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
flhA; flagellar biosynthesis protein FlhA
SCN18_10_11_15_R3_B_scaffold_131_rev_final_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27136..27348
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLD0_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29234.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCN18_10_11_15_R3_B_scaffold_131_rev_final_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27710..28753)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00030594AE
Uncharacterized protein {ECO:0000313|EMBL:EKS36755.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_10_11_15_R3_B_scaffold_131_rev_final_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28753..29268)
DNA (516bp) protein (172aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJJ7_AFIFE
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKS29236.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
sigma-70 region 2
SCN18_10_11_15_R3_B_scaffold_131_rev_final_26
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29510..29926)
DNA (417bp) protein (139aa)
Flagellar export protein FliJ n=2 Tax=Oligotropha carboxidovorans RepID=B6JIH1_OLICO
fliJ; flagellar export protein FliJ
Putative flagellar export protein FliJ {ECO:0000313|EMBL:AEI05711.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_10_11_15_R3_B_scaffold_131_rev_final_27
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30036..31361)
DNA (1326bp) protein (442aa)
fliI; flagellum-specific ATP synthase (EC:3.6.3.14)
ATP synthase n=1 Tax=Afipia birgiae RepID=UPI000307DECF
Flagellum-specific ATP synthase FliI {ECO:0000313|EMBL:EGP06241.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCN18_10_11_15_R3_B_scaffold_131_rev_final_28
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31731..32432
DNA (702bp) protein (234aa)
chemotaxis protein CheY n=1 Tax=Afipia birgiae RepID=UPI0002F055D6
cell cycle transcriptional regulator CtrA
Cell cycle response regulator {ECO:0000313|EMBL:AEI05709.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCN18_10_11_15_R3_B_scaffold_131_rev_final_29
R_Alphaproteobacteria_46_13, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32681..33871)
DNA (1191bp) protein (397aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IU93_RHOP2
methyl-accepting chemotaxis sensory transducer
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_46_13_curated
Displaying items 1-30 of 365 in total

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