ggKbase home page

SCN18_10_11_15_R4_B_scaffold_239

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_B_scaffold_239_1
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45..707)
DNA (663bp) protein (221aa)
Putative CBS domain protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUP7_9RHIZ
Putative CBS domain protein {ECO:0000313|EMBL:EHK55537.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_239_2
scnpilot_dereplicated_Plasmid_Sphingomonas_1, scnpilot_dereplicated_Plasmid_Sphingomonas_1, scnpilot_dereplicated_Plasmid_Sphingomonas_1, scnpilot_dereplicated_Plasmid_Sphingomonas_1, scnpilot_dereplicated_Plasmid_Sphingomonas_1, Plasmid-like

Not on your lists

929..2365
DNA (1437bp) protein (479aa)
cardiolipin synthetase 2 (EC:2.7.8.-)
Cardiolipin synthetase 2 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I190_9RHIZ
Cardiolipin synthetase 2 {ECO:0000313|EMBL:EHK53252.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCN18_10_11_15_R4_B_scaffold_239_3
unknown

Not on your lists

comp(2488..2790)
DNA (303bp) protein (101aa)

This feature has no annotations

SCN18_10_11_15_R4_B_scaffold_239_4
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3410..4240
DNA (831bp) protein (277aa)
40-residue YVTN family beta-propeller repeat protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUP9_9RHIZ
40-residue YVTN family beta-propeller repeat protein {ECO:0000313|EMBL:EHK55539.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_239_5
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4533..4919)
DNA (387bp) protein (129aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUQ0_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK55540.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_239_6
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4939..5055)
DNA (117bp) protein (39aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUQ1_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK55541.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCN18_10_11_15_R4_B_scaffold_239_7
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5128..5658)
DNA (531bp) protein (177aa)
Calcium-binding EF-hand-containing protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUQ2_9RHIZ
Calcium-binding EF-hand-containing protein {ECO:0000313|EMBL:EHK55542.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
calcium-binding EF-hand-containing protein
SCN18_10_11_15_R4_B_scaffold_239_8
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5840..6565
DNA (726bp) protein (242aa)
Two component transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUQ3_9RHIZ
Two component transcriptional regulator {ECO:0000313|EMBL:EHK55543.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
two component transcriptional regulator
SCN18_10_11_15_R4_B_scaffold_239_9
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6562..7965
DNA (1404bp) protein (468aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUQ4_9RHIZ
integral membrane sensor signal transduction histidine kinase
SCN18_10_11_15_R4_B_scaffold_239_10
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8161..8880)
DNA (720bp) protein (240aa)
High-affinity nickel-transporter n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUQ5_9RHIZ
High-affinity nickel-transporter {ECO:0000313|EMBL:EHK55545.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
high-affinity nickel-transporter
SCN18_10_11_15_R4_B_scaffold_239_11
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8880..9368)
DNA (489bp) protein (163aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUQ6_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK55546.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
membrane protein
SCN18_10_11_15_R4_B_scaffold_239_12
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9350..10669)
DNA (1320bp) protein (440aa)
NreB protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUQ7_9RHIZ
NreB protein {ECO:0000313|EMBL:EHK55547.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
NreB protein
SCN18_10_11_15_R4_B_scaffold_239_13
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10669..10944)
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUQ8_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK55548.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_239_14
unknown

Not on your lists

comp(11255..11497)
DNA (243bp) protein (81aa)

This feature has no annotations

SCN18_10_11_15_R4_B_scaffold_239_15
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11525..11959
DNA (435bp) protein (145aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I1A6_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53268.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_239_16
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12129..14933
DNA (2805bp) protein (935aa)
Putative E1-E2 type ATPase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUK4_9RHIZ
Putative E1-E2 type ATPase {ECO:0000313|EMBL:EHK55550.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
E1-E2 type ATPase
SCN18_10_11_15_R4_B_scaffold_239_17
unknown

Not on your lists

15008..15184
DNA (177bp) protein (59aa)
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_239_18
CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, Gemmatimonadetes, Bacteria

Not on your lists

15268..15981
DNA (714bp) protein (238aa)
Membrane protein, putative n=1 Tax=Roseovarius sp. 217 RepID=A3W7Z3_9RHOB
Membrane protein {ECO:0000313|EMBL:KGF67216.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_239_19
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16418..16780
DNA (363bp) protein (121aa)
UPI0003CE6C00 related cluster n=1 Tax=unknown RepID=UPI0003CE6C00
Transposase number 3 for insertion sequence {ECO:0000313|EMBL:CDN96528.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_239_20
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16839..17600
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UFJ8_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:EGP54503.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_239_21
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17617..18099
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI00037467EF
Uncharacterized protein {ECO:0000313|EMBL:EHN77433.1}; TaxID=1120227 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces coelicoflavus ZG0656.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_239_22
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18345..19178
DNA (834bp) protein (278aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VQ31_RHOPX
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU43708.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCN18_10_11_15_R4_B_scaffold_239_23
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19175..20254
DNA (1080bp) protein (360aa)
F-type H+-transporting ATPase subunit B n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GXM8_9BRAD
F-type H+-transporting ATPase subunit B {ECO:0000313|EMBL:ERF82257.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_239_24
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20251..21108
DNA (858bp) protein (286aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VQ33_RHOPX
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADU43710.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCN18_10_11_15_R4_B_scaffold_239_25
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21105..21683
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NXC7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34997.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_239_26
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21685..25086
DNA (3402bp) protein (1134aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
UvrD/REP helicase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VQ35_RHOPX
UvrD/REP helicase
SCN18_10_11_15_R4_B_scaffold_239_27
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25168..25914
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EZT9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV09598.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_239_28
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25889..27061
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2P3_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig170, whole genome shotgun sequence {ECO:0000313|EMBL:KIU50314.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
UBA/THIF-type NAD/FAD-binding protein
SCN18_10_11_15_R4_B_scaffold_239_29
SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, SCNpilot_P_inoc_Phage_43_79, Phage

Not on your lists

27058..27501
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9E9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34993.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_239_30
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27715..30369
DNA (2655bp) protein (885aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZGM6_METPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB81259.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
Displaying items 1-30 of 67 in total

View Taxonomy