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SCN18_10_11_15_R4_B_scaffold_537

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_B_scaffold_537_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1747)
DNA (1746bp) protein (582aa)
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component n=1 Tax=Rhizobium sp. CF080 RepID=J2TN67_9RHIZ
Oligopeptide transport ATP-binding protein OppD {ECO:0000313|EMBL:KFC71193.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein
SCN18_10_11_15_R4_B_scaffold_537_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1744..2685)
DNA (942bp) protein (314aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Rhizobium sp. CF080 RepID=J2L4E1_9RHIZ
ABC di/oligopeptide transporter
ABC di/oligopeptide transporter {ECO:0000313|EMBL:CDN58156.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCN18_10_11_15_R4_B_scaffold_537_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2799..3722
DNA (924bp) protein (308aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2KIT8_9RHIZ
abgR; HTH-type transcriptional regulator AbgR
HTH-type transcriptional regulator AbgR {ECO:0000313|EMBL:CDN58158.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCN18_10_11_15_R4_B_scaffold_537_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3826..5328)
DNA (1503bp) protein (501aa)
ABC-type dipeptide transport system, periplasmic component n=1 Tax=Rhizobium sp. CF080 RepID=J3CWT5_9RHIZ
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGE02185.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
yliB; Putative binding protein YliB
SCN18_10_11_15_R4_B_scaffold_537_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5562..7376
DNA (1815bp) protein (605aa)
Choline-sulfatase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7C7_PELHB
Choline-sulfatase {ECO:0000313|EMBL:KFC71189.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
choline-sulfatase
SCN18_10_11_15_R4_B_scaffold_537_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7513..8550
DNA (1038bp) protein (346aa)
Putative solute-binding protein component of ABC transporter n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UUL5_9RHIZ
Putative solute-binding protein component of ABC transporter {ECO:0000313|EMBL:ENN84466.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein
SCN18_10_11_15_R4_B_scaffold_537_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8645..9472
DNA (828bp) protein (276aa)
Spermidine/putrescine ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JGX8_AGRRK
potB; spermidine/putrescine ABC transporter
ABC-type spermidine/putrescine transport system, permease component I {ECO:0000313|EMBL:EJK78534.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCN18_10_11_15_R4_B_scaffold_537_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9469..10257
DNA (789bp) protein (263aa)
spermidine/putrescine ABC transporter ATP-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003698B88
ABC transporter permease
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACS55934.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCN18_10_11_15_R4_B_scaffold_537_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10265..11326
DNA (1062bp) protein (354aa)
UPI0003CFEA76 related cluster n=1 Tax=unknown RepID=UPI0003CFEA76
Spermidine/putrescine ABC transporter ATPase {ECO:0000313|EMBL:KKB12418.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
potA; spermidine/putrescine ABC transporter
SCN18_10_11_15_R4_B_scaffold_537_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11323..12645
DNA (1323bp) protein (441aa)
amidohydrolase n=1 Tax=Hoeflea sp. 108 RepID=UPI000361B6B7
Cytosine deaminase-like metal-dependent hydrolase {ECO:0000313|EMBL:EIM28892.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
amidohydrolase
SCN18_10_11_15_R4_B_scaffold_537_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12638..13576
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003817CB2
Nucleoside hydrolase {ECO:0000313|EMBL:KKB12422.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
inosine/uridine-preferring nucleoside hydrolase
SCN18_10_11_15_R4_B_scaffold_537_12
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13573..14280
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036DC0FD
Phosphoribosyltransferase {ECO:0000313|EMBL:KKB85804.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
phosphoribosyltransferase
SCN18_10_11_15_R4_B_scaffold_537_13
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14435..15379
DNA (945bp) protein (315aa)
Diguanylate cyclase (EC:2.7.7.65)
Putative Diguanylate cyclase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y7F0_9RHIZ
Putative Diguanylate cyclase {ECO:0000313|EMBL:EHH12272.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCN18_10_11_15_R4_B_scaffold_537_14
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15449..16690
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MTM3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF20702.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
major facilitator superfamily protein
SCN18_10_11_15_R4_B_scaffold_537_15
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16795..17721
DNA (927bp) protein (309aa)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
acetyl-CoA carboxylase subunit beta (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKT1_9RHIZ
SCN18_10_11_15_R4_B_scaffold_537_16
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17759..19090
DNA (1332bp) protein (444aa)
FolC bifunctional protein (EC:6.3.2.17)
Folylpolyglutamate synthase (FolC) n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKT2_9RHIZ
Folylpolyglutamate synthase (FolC) {ECO:0000313|EMBL:EHK58780.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCN18_10_11_15_R4_B_scaffold_537_17
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19170..19493)
DNA (324bp) protein (108aa)
Thioredoxin n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BWK9_9RHIZ
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
thioredoxin
SCN18_10_11_15_R4_B_scaffold_537_18
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19564..23085)
DNA (3522bp) protein (1174aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
DNA helicase/exodeoxyribonuclease V subunit A (EC:3.1.11.5)
DNA helicase/exodeoxyribonuclease V subunit A n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BWL0_9RHIZ
SCN18_10_11_15_R4_B_scaffold_537_19
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23082..26201)
DNA (3120bp) protein (1040aa)
UPI0003CF941E related cluster n=1 Tax=unknown RepID=UPI0003CF941E
LuxR family transcriptional regulator {ECO:0000313|EMBL:ESZ00531.1}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
double-strand break repair protein AddB, alphaproteobacterial type
SCN18_10_11_15_R4_B_scaffold_537_20
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26198..26920)
DNA (723bp) protein (241aa)
mannose-1-phosphate guanylyltransferase n=1 Tax=Rhizobium loti RepID=UPI00035F935C
Nucleotidyl transferase family protein {ECO:0000313|EMBL:AID33934.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_537_21
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26917..28428)
DNA (1512bp) protein (504aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EI55_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX19366.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ATPase, YjeE family
SCN18_10_11_15_R4_B_scaffold_537_22
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28437..30974)
DNA (2538bp) protein (846aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ATPase domain-containing protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKT8_9RHIZ
signal transduction histidine kinase
SCN18_10_11_15_R4_B_scaffold_537_23
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31171..32568)
DNA (1398bp) protein (466aa)
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
S-adenosyl-L-homocysteine hydrolase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030927C0
SCN18_10_11_15_R4_B_scaffold_537_24
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32747..33166
DNA (420bp) protein (140aa)
Protein containing DUF132 n=2 Tax=mine drainage metagenome RepID=T0YK07_9ZZZZ
Protein containing DUF132 {ECO:0000313|EMBL:EQD33493.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_537_25
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33163..33405
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T2W7_CAUSK
Uncharacterized protein {ECO:0000313|EMBL:KJV08550.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_537_26
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33420..33716)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037D7692
HPr kinase {ECO:0000313|EMBL:ERM02882.1}; TaxID=1337887 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium 229E.;"
HPr family phosphocarrier protein
SCN18_10_11_15_R4_B_scaffold_537_27
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33713..34114)
DNA (402bp) protein (134aa)
PTS fructose transporter subunit IIA n=1 Tax=Hoeflea sp. 108 RepID=UPI0003637BC7
PTS system fructose subfamily IIA component {ECO:0000313|EMBL:CDX37395.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
PTS system fructose subfamily IIA component
SCN18_10_11_15_R4_B_scaffold_537_28
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34303..34752)
DNA (450bp) protein (150aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKU2_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58790.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCN18_10_11_15_R4_B_scaffold_537_29
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34754..36532)
DNA (1779bp) protein (593aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y780_9RHIZ
integral membrane sensor signal transduction histidine kinase
Displaying 29 items

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