ggKbase home page

SCN18_10_11_15_R4_P_scaffold_764

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_P_scaffold_764_1
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1378
DNA (1377bp) protein (459aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=RPOC_XANP2
DNA-directed RNA polymerase subunit beta'
SCN18_10_11_15_R4_P_scaffold_764_2
SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1551..2897
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00035EA424
Uncharacterized protein {ECO:0000313|EMBL:EPZ52941.1}; TaxID=1356854 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidoterrestris ATCC 49025.;"
amino acid permease
SCN18_10_11_15_R4_P_scaffold_764_3
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3044..3529
DNA (486bp) protein (162aa)
Heat shock protein DnaJ domain protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QTM3_METTR
heat shock protein DnaJ domain-containing protein
Heat shock protein DnaJ domain protein {ECO:0000313|EMBL:ABS67527.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_10_11_15_R4_P_scaffold_764_4
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3566..4930
DNA (1365bp) protein (455aa)
tRNA/rRNA cytosine-C5-methylase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ICA4_AZOC5
tRNA/rRNA cytosine-C5-methylase
tRNA/rRNA cytosine-C5-methylase {ECO:0000313|EMBL:BAF89180.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCN18_10_11_15_R4_P_scaffold_764_5
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4938..6971)
DNA (2034bp) protein (678aa)
UPF0313 protein Xaut_0942 n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDV0_XANP2
UPF0313 protein Xaut_0942 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
radical SAM domain-containing protein
SCN18_10_11_15_R4_P_scaffold_764_6
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7084..8169
DNA (1086bp) protein (362aa)
Luciferase family protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJH4_XANP2
luciferase family protein
Luciferase family protein {ECO:0000313|EMBL:ABS68167.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_10_11_15_R4_P_scaffold_764_7
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8263..8649)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDT3_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS66176.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_10_11_15_R4_P_scaffold_764_8
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8862..9335
DNA (474bp) protein (158aa)
transcriptional regulator n=1 Tax=Ochrobactrum anthropi RepID=UPI000287B50F
Transcriptional regulator {ECO:0000313|EMBL:EXL01974.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
marR family protein
SCN18_10_11_15_R4_P_scaffold_764_9
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9332..10492
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B7T7_PARDP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL71581.1}; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCN18_10_11_15_R4_P_scaffold_764_10
GWF2_Elusimicrobia_62_30_curated, Elusimicrobia, Bacteria

Not on your lists

comp(10543..10869)
DNA (327bp) protein (109aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036501AE
Tax=GWF2_Elusimicrobia_62_30_curated
SCN18_10_11_15_R4_P_scaffold_764_11
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10932..12749)
DNA (1818bp) protein (606aa)
twin-arginine translocation pathway signal protein n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000367ED21
Amidohydrolase {ECO:0000313|EMBL:GAN51660.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
amidohydrolase 3
SCN18_10_11_15_R4_P_scaffold_764_12
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12998..13411
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7ILS4_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68967.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
Displaying 12 items

View Taxonomy