ggKbase home page

SCN18_10_11_15_R4_P_scaffold_788

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R4_P_scaffold_788_1
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33..2888)
DNA (2856bp) protein (952aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=RPOC_XANP2
DNA-directed RNA polymerase subunit beta'
SCN18_10_11_15_R4_P_scaffold_788_2
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2992..7068)
DNA (4077bp) protein (1359aa)
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=RPOB_XANP2
rpoB; DNA-directed RNA polymerase subunit beta
SCN18_10_11_15_R4_P_scaffold_788_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7344..7718)
DNA (375bp) protein (125aa)
50S ribosomal protein L7/L12 n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=RL7_XANP2
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000255|HAMAP-Rule:MF_00368}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_10_11_15_R4_P_scaffold_788_4
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7787..8305)
DNA (519bp) protein (173aa)
50S ribosomal protein L10 n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=RL10_AZOC5
rplJ; 50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000255|HAMAP-Rule:MF_00362}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCN18_10_11_15_R4_P_scaffold_788_5
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9042..9740)
DNA (699bp) protein (233aa)
50S ribosomal protein L1 n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=RL1_XANP2
rplA; 50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000255|HAMAP-Rule:MF_01318}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_10_11_15_R4_P_scaffold_788_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9746..10195)
DNA (450bp) protein (150aa)
50S ribosomal protein L11 n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=RL11_XANP2
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000255|HAMAP-Rule:MF_00736}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_10_11_15_R4_P_scaffold_788_7
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10375..10905)
DNA (531bp) protein (177aa)
Transcription termination/antitermination protein NusG n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HTX2_AZOC5
nusG; transcription antitermination protein
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCN18_10_11_15_R4_P_scaffold_788_8
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10920..11117)
DNA (198bp) protein (66aa)
Protein translocase subunit SecE n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IKP4_XANP2
preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_10_11_15_R4_P_scaffold_788_trna_1
unknown

Not on your lists

comp(11397..11470)
DNA (74bp)
transferRNA Trp
SCN18_10_11_15_R4_P_scaffold_788_9
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11654..12205)
DNA (552bp) protein (184aa)
ATPase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2JFS1_9BURK
ATPase {ECO:0000313|EMBL:ESJ26781.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
ATPase-like protein
SCN18_10_11_15_R4_P_scaffold_788_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12344..12640)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IKP3_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68586.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_10_11_15_R4_P_scaffold_788_11
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12781..12927)
DNA (147bp) protein (49aa)
elongation factor Tu n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003452E3A
translation elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
Displaying 12 items

View Taxonomy