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SCN18_10_11_15_R5_B_scaffold_10

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Displaying items 1-30 of 513 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R5_B_scaffold_10_1
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..130
DNA (129bp) protein (43aa)
Transposase n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q982K6_RHILO
transposase
Transposase {ECO:0000313|EMBL:BAB54450.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCN18_10_11_15_R5_B_scaffold_10_2
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(176..670)
DNA (495bp) protein (165aa)
UPF0178 protein AZC_4000 n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=Y4000_AZOC5
UPF0178 protein BN1110_05562 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCN18_10_11_15_R5_B_scaffold_10_3
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(681..2579)
DNA (1899bp) protein (633aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IFP3_XANP2
ATP-dependent RNA helicase DbpA {ECO:0000313|EMBL:CEJ15218.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
DEAD/DEAH box helicase
SCN18_10_11_15_R5_B_scaffold_10_4
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2883..3863
DNA (981bp) protein (327aa)
Uncharacterized protein (Fragment) n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RNA8_9PROT
Tripartite tricarboxylate transporter family receptor {ECO:0000313|EMBL:CEJ15217.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCN18_10_11_15_R5_B_scaffold_10_5
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

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3880..4920
DNA (1041bp) protein (347aa)
GroES-like protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RNA7_9PROT
L-threonine 3-dehydrogenase {ECO:0000313|EMBL:CEJ15216.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Alcohol dehydrogenase GroES-like protein
SCN18_10_11_15_R5_B_scaffold_10_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4917..5507
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DRV4_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:CEJ15215.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCN18_10_11_15_R5_B_scaffold_10_7
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5577..6185
DNA (609bp) protein (203aa)
PEP2 protein-like protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J2J3_POLGS
PEP2 protein-like protein
PEP2 protein-like protein {ECO:0000313|EMBL:ADZ70907.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCN18_10_11_15_R5_B_scaffold_10_8
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6553..7488
DNA (936bp) protein (312aa)
Arginase family protein n=3 Tax=Burkholderia cenocepacia RepID=T0E5W7_9BURK
Amidohydrolase {ECO:0000313|EMBL:KAK49160.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
putative amidinohydrolase
SCN18_10_11_15_R5_B_scaffold_10_9
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7496..8830)
DNA (1335bp) protein (445aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20XG1_RHOPB
periplasmic sensor signal transduction histidine kinase
SCN18_10_11_15_R5_B_scaffold_10_10
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8830..9549)
DNA (720bp) protein (240aa)
transcriptional regulator n=1 Tax=Methylobacterium sp. 77 RepID=UPI00036C00E6
Transcriptional regulatory protein OmpR {ECO:0000313|EMBL:CEJ15213.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ompR; response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family)
SCN18_10_11_15_R5_B_scaffold_10_11
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9734..10315
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G290_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL74877.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCN18_10_11_15_R5_B_scaffold_10_12
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10458..11333
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003786568
Sulfoxide reductase heme-binding subunit YedZ {ECO:0000313|EMBL:CEJ15212.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ferric reductase domain-containing protein
SCN18_10_11_15_R5_B_scaffold_10_13
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11364..11783
DNA (420bp) protein (140aa)
methionine sulfoxide reductase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003042B1E
Peptide methionine sulfoxide reductase MsrB {ECO:0000313|EMBL:CEJ15211.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
transcriptional regulator
SCN18_10_11_15_R5_B_scaffold_10_14
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11986..12864)
DNA (879bp) protein (293aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20ZC6_RHOPB
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABD89510.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCN18_10_11_15_R5_B_scaffold_10_15
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12967..13809
DNA (843bp) protein (281aa)
Transcriptional regulator, XRE family n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20ZC5_RHOPB
helix-turn-helix family protein
Helix-turn-helix family protein {ECO:0000313|EMBL:AJZ62377.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
SCN18_10_11_15_R5_B_scaffold_10_16
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13938..14828
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026308DA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP74513.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_10_11_15_R5_B_scaffold_10_17
unknown

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14913..15470
DNA (558bp) protein (186aa)

This feature has no annotations

SCN18_10_11_15_R5_B_scaffold_10_18
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15516..16616)
DNA (1101bp) protein (367aa)
sn-glycerol 3-phosphate transport protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z8T9_9BRAD
Trehalose import ATP-binding protein SugC {ECO:0000313|EMBL:CEJ15206.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
sn-glycerol 3-phosphate transport protein
SCN18_10_11_15_R5_B_scaffold_10_19
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16627..17538)
DNA (912bp) protein (304aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IX08_RHOP2
Inner membrane ABC transporter permease protein YcjP {ECO:0000313|EMBL:CEJ15205.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
binding-protein dependent transport system inner membrane protein
SCN18_10_11_15_R5_B_scaffold_10_20
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17538..18530)
DNA (993bp) protein (331aa)
Putative permease protein of sugar ABC transporter n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SHA4_9BRAD
Maltose transport system permease protein MalF {ECO:0000313|EMBL:CEJ15204.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative permease protein of sugar ABC transporter
SCN18_10_11_15_R5_B_scaffold_10_21
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18664..20004)
DNA (1341bp) protein (447aa)
ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89LJ1_BRADU
Bacterial extracellular solute-binding protein {ECO:0000313|EMBL:CEJ15203.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter substrate-binding protein
SCN18_10_11_15_R5_B_scaffold_10_22
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20605..22395
DNA (1791bp) protein (597aa)
glutamate synthase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI0003799072
NAD-dependent dihydropyrimidine dehydrogenase subunit PreT {ECO:0000313|EMBL:CEJ15202.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative glutamate synthase small subunit
SCN18_10_11_15_R5_B_scaffold_10_23
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22377..24212
DNA (1836bp) protein (612aa)
korA; 2-ketoglutarate: NADP oxidoreductase subunit alpha (EC:1.2.1.52)
2-ketoglutarate: NADP oxidoreductase,alpha subunit n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P1U2_AROAE
2-oxoglutarate oxidoreductase subunit KorA {ECO:0000313|EMBL:CEJ15201.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCN18_10_11_15_R5_B_scaffold_10_24
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24209..25264
DNA (1056bp) protein (352aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037C6F4A
2-oxoglutarate oxidoreductase subunit KorB {ECO:0000313|EMBL:CEJ15200.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
2-oxoglutarate ferredoxin oxidoreductase subunit beta
SCN18_10_11_15_R5_B_scaffold_10_25
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25933..26943
DNA (1011bp) protein (337aa)
kinase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003669E19
kinase
Putative Phosphotransferase enzyme family {ECO:0000313|EMBL:CCD90538.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
SCN18_10_11_15_R5_B_scaffold_10_26
Hydrogenophaga sp. PBC_SCNpilot_P_inoc_Hydrogenophaga_70_12, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27251..28153)
DNA (903bp) protein (301aa)
HTH-type transcriptional regulator trpI, putative n=1 Tax=Burkholderia sp. YI23 RepID=G8MLZ9_9BURK
trpI; HTH-type transcriptional regulator TrpL
HTH-type transcriptional regulator trpI, putative {ECO:0000313|EMBL:AET93879.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
SCN18_10_11_15_R5_B_scaffold_10_27
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

28292..29569
DNA (1278bp) protein (426aa)
Ribulose 1,5-bisphosphate carboxylase, large subunit n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WV30_9BURK
Ribulose 1,5-bisphosphate carboxylase, large subunit {ECO:0000313|EMBL:EHR72169.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
RuBisCO-like protein
SCN18_10_11_15_R5_B_scaffold_10_28
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

29566..30891
DNA (1326bp) protein (442aa)
Hypothetical conserved protein n=1 Tax=Sinorhizobium fredii GR64 RepID=F7XYQ9_RHIFR
Hypothetical conserved protein {ECO:0000313|EMBL:AEI89570.1}; TaxID=882101 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii GR64.;"
hypothetical protein
SCN18_10_11_15_R5_B_scaffold_10_29
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30875..31753
DNA (879bp) protein (293aa)
Prephenate dehydrogenase n=1 Tax=Rhizobium sp. CF142 RepID=J1T7Q0_9RHIZ
Prephenate dehydrogenase {ECO:0000313|EMBL:EJJ27726.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
NAD(P)-binding domain-containig protein
SCN18_10_11_15_R5_B_scaffold_10_30
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31789..32268
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YNI2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CEJ15199.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
Displaying items 1-30 of 513 in total

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