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SCN18_13_7_16_R1_B_scaffold_1536

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_13_7_16_R1_B_scaffold_1536_trna_1
unknown

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comp(581..654)
DNA (74bp)
transferRNA Met
SCN18_13_7_16_R1_B_scaffold_1536_1
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1229..2515
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LTN2_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB74577.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCN18_13_7_16_R1_B_scaffold_1536_2
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2529..3203
DNA (675bp) protein (225aa)
UPI0003CF28E9 related cluster n=1 Tax=unknown RepID=UPI0003CF28E9
HAD family hydrolase {ECO:0000313|EMBL:ESX73448.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
HAD-superfamily hydrolase
SCN18_13_7_16_R1_B_scaffold_1536_3
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3295..3855)
DNA (561bp) protein (187aa)
Transcriptional regulator, MarR family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TTE9_9PROT
MarR family transcriptional regulator {ECO:0000313|EMBL:KFG89336.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
marR family transcriptional regulator
SCN18_13_7_16_R1_B_scaffold_1536_4
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4128..4883)
DNA (756bp) protein (252aa)
Transcriptional regulator, GntR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A134_STAND
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADH87544.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCN18_13_7_16_R1_B_scaffold_1536_5
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5018..5893
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Streptomyces vitaminophilus RepID=UPI0003642FF5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ87560.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCN18_13_7_16_R1_B_scaffold_1536_6
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5907..6215
DNA (309bp) protein (103aa)
Extradiol ring-cleavage dioxygenase LigAB, LigA subunit n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B537_STRRD
extradiol ring-cleavage dioxygenase LigAB, LigA subunit
Extradiol ring-cleavage dioxygenase LigAB, LigA subunit {ECO:0000313|EMBL:ACZ87561.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
SCN18_13_7_16_R1_B_scaffold_1536_7
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6361..7629
DNA (1269bp) protein (423aa)
Extracellular ligand-binding receptor n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QAI7_RHOPT
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ACF00524.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCN18_13_7_16_R1_B_scaffold_1536_8
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7646..8338
DNA (693bp) protein (231aa)
Uncharacterized protein ycgI n=1 Tax=Marinobacter sp. BSs20148 RepID=M1FDJ9_9ALTE
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCN18_13_7_16_R1_B_scaffold_1536_9
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8338..9294
DNA (957bp) protein (319aa)
amidase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037E045E
Putative acetamidase/formamidase {ECO:0000313|EMBL:EJN11325.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
SCN18_13_7_16_R1_B_scaffold_1536_10
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9291..10055
DNA (765bp) protein (255aa)
ABC transporter ATP-binding protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=Q6W1Z1_RHISN
ABC transporter {ECO:0000313|EMBL:KGA17067.1}; TaxID=449393 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
ABC transporter ATP-binding protein
SCN18_13_7_16_R1_B_scaffold_1536_11
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10052..10762
DNA (711bp) protein (237aa)
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) n=1 Tax=Rhodococcus sp. EsD8 RepID=N1M353_9NOCA
Leucine/isoleucine/valine transporter subunit {ECO:0000313|EMBL:KGA11351.1}; TaxID=1504320 species="Bacteria; Actinobacteria.;" source="actinobacterium acAcidi.;"
putative branched-chain amino acid ABC transporter ATP-binding protein
SCN18_13_7_16_R1_B_scaffold_1536_12
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10759..11640
DNA (882bp) protein (294aa)
ABC transporter permease n=1 Tax=Nonomuraea coxensis RepID=UPI000376CDC9
ABC transporter permease {ECO:0000313|EMBL:AII03570.1}; TaxID=37919 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (Nocardia opaca).;"
ABC transporter permease
SCN18_13_7_16_R1_B_scaffold_1536_13
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11637..12683
DNA (1047bp) protein (349aa)
ABC transporter permease protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TJV5_9PROT
inner-membrane translocator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_19_curated
SCN18_13_7_16_R1_B_scaffold_1536_14
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12670..14019
DNA (1350bp) protein (450aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036D07CA
metal-dependent hydrolase
Metal-dependent hydrolase {ECO:0000313|EMBL:AIB15998.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
Displaying 15 items

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